Pairwise Alignments

Query, 356 a.a., bacterial peptide chain Release factor 1 (RF-1) from Caulobacter crescentus NA1000

Subject, 360 a.a., peptide chain release factor 1 from Agrobacterium fabrum C58

 Score =  431 bits (1109), Expect = e-125
 Identities = 216/356 (60%), Positives = 283/356 (79%), Gaps = 5/356 (1%)

Query: 2   RLPQARLDQVLDRFREVEARMGAATDGAEIVKLSKEHAELRPVAEAVERLAKLSAERAEL 61
           +LP  ++ ++  RF E+EARM A       VKL+ E++EL PV + +    K  +E A+L
Sbjct: 3   KLPVEKMRELERRFGEIEARMSAGPAADVYVKLASEYSELEPVVKKIRDYEKAISEAADL 62

Query: 62  DVM----ASDPEMAEMVRDEIQALDEKLPVMERELALMLAPKDKDENASAILEVRAGTGG 117
           + +     +D +M ++   E+  ++ ++  +E+++ ++L PKD  +  SAILE+RAGTGG
Sbjct: 63  EALLADKTTDKDMRDLAEMELPEVETRIRELEKDMQVLLLPKDAADEKSAILEIRAGTGG 122

Query: 118 DEAALFAGDLFRMYQRYAQTQGWRVEIDSISEGEMGGFKEIVASITGDGVFGRLKFESGV 177
            EAALFAGDLFRMY+R+A T+GW+VE+ S SEGE GG+KEI+A+ITG GVF +LKFESGV
Sbjct: 123 SEAALFAGDLFRMYERFAATKGWKVEVLSASEGEAGGYKEIIATITGRGVFSKLKFESGV 182

Query: 178 HRVQRVPATEAQGRIHTSAATVAVLPEAEDVEIEIKESDLRIDTYRSSGAGGQHVNKTDS 237
           HRVQRVP TEA GRIHTSAATVAVLPEAED+++EI+  D+RIDT R+SGAGGQHVN TDS
Sbjct: 183 HRVQRVPETEASGRIHTSAATVAVLPEAEDIDVEIRPEDIRIDTMRASGAGGQHVNTTDS 242

Query: 238 AVRITHLPTGVVVTSSEKSQHQNRARAMKNLKARLYDMQREALDSARSEARKSQVGSGDR 297
           AVRITHLPTG++VTSSEKSQHQNRA+AM+ L++RLYD++R+ +DS RS  RKSQVGSGDR
Sbjct: 243 AVRITHLPTGLIVTSSEKSQHQNRAKAMQVLRSRLYDIERQKVDSERSADRKSQVGSGDR 302

Query: 298 SERIRTYNFPQGRVTDHRINLTLYNLARIMEGDALDDVINPLIAEDQAERLASLEE 353
           SERIRTYNFPQGRVTDHRINLTLY L R++EG+ +D++++ LIA+ QA +LA L E
Sbjct: 303 SERIRTYNFPQGRVTDHRINLTLYKLDRVIEGE-IDELVDALIADYQAGQLAQLGE 357