Pairwise Alignments

Query, 383 a.a., cytochrome bd-type quinol oxidase, subunit 2 cydB from Caulobacter crescentus NA1000

Subject, 379 a.a., Cytochrome d ubiquinol oxidase subunit II (EC 1.10.3.-) from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score =  370 bits (951), Expect = e-107
 Identities = 182/375 (48%), Positives = 244/375 (65%), Gaps = 2/375 (0%)

Query: 5   VDFATLRVIWWALVGILLIGFALTDGFDMGVGALLPFVAKTDEERRMVINTVGATWEGNQ 64
           +D+  LR IWW LVGILLIGFA+TDGFDMGVG L  F+ + D ERR++IN++   W+GNQ
Sbjct: 2   IDYEVLRFIWWLLVGILLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61

Query: 65  VWFILGGGAIFAAWPFVYAISFSGFYLAMFVVLTAMILRPVGFKYRSKRQDPRWRAFWDW 124
           VW I  GGA+FAAWP VYA +FSGFY+AM +VL ++  RPVGF YRSK +DPRWR  WDW
Sbjct: 62  VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEDPRWRNMWDW 121

Query: 125 ALFVGGFVPVLCFGVALGNVLQGAPFRLDSDLRAFYDGSFLGLFSPFALLCGLLSVSMLV 184
            +F+G FVP L  GVA GN+LQG PF +D  LR +Y G+F  L +PF LL G++SV M++
Sbjct: 122 GVFIGSFVPPLVIGVAFGNLLQGVPFHVDEYLRLYYTGNFFQLLNPFGLLAGIVSVGMII 181

Query: 185 LHGAAWITVKGEEGPVAERARRIGELAGLASIVLFAAGGFWVAFGGMGFRIEGLADAAGP 244
             GA ++ ++   G +  RAR   ++A L ++V FA  G WV +G  G+ +    D    
Sbjct: 182 TQGATYLQMR-TVGELHLRARATSQIAALVTLVCFALAGVWVMYGIDGYVVTSAIDHHAA 240

Query: 245 SNPLRGAAAVREPGAWLDNYGRHGWMILAPVLGFAGAALALLGLRAKSAWMAFTGSSASA 304
           SNPL    A RE GAWL N+     + L P LG     L +L  R +    AF  SS + 
Sbjct: 241 SNPLTKEVA-REAGAWLVNFNNAPILWLVPALGVVLPLLTILTSRMEKGAWAFLFSSLTL 299

Query: 305 VGIIATVGLSMFPFILPSSVDPRSSLTVWNASSSHLTLFIMLVVTIVFLPLVLAYTAWVY 364
             II T G++MFPF++PSS    +SLT+W+A+SS +TL +M  V  VF+P++L YT+W Y
Sbjct: 300 ACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQMTLNLMTWVAAVFVPIILIYTSWCY 359

Query: 365 KVLWGRSTTAALAVN 379
             ++GR T   +  N
Sbjct: 360 WKMFGRITKEHIESN 374