Pairwise Alignments

Query, 383 a.a., cytochrome bd-type quinol oxidase, subunit 2 cydB from Caulobacter crescentus NA1000

Subject, 379 a.a., cytochrome d ubiquinol oxidase subunit II from Erwinia tracheiphila SCR3

 Score =  361 bits (926), Expect = e-104
 Identities = 178/375 (47%), Positives = 242/375 (64%), Gaps = 2/375 (0%)

Query: 5   VDFATLRVIWWALVGILLIGFALTDGFDMGVGALLPFVAKTDEERRMVINTVGATWEGNQ 64
           + +  LR +WW LVG+LLIGFA+TDGFDMGVG L   + +TD ERR++IN++   W+GNQ
Sbjct: 2   ISYELLRFVWWVLVGVLLIGFAVTDGFDMGVGMLSRILGRTDNERRVMINSIAPHWDGNQ 61

Query: 65  VWFILGGGAIFAAWPFVYAISFSGFYLAMFVVLTAMILRPVGFKYRSKRQDPRWRAFWDW 124
           VW I  GGA+FAAWP VYA +FSGFY+AM +VL+++  RP+GF YRSK  D RWR  WD 
Sbjct: 62  VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLSSLFFRPIGFDYRSKIADKRWRGMWDL 121

Query: 125 ALFVGGFVPVLCFGVALGNVLQGAPFRLDSDLRAFYDGSFLGLFSPFALLCGLLSVSMLV 184
            +FVG  VP L FGVA GN+LQG PF  D+ LR FY GSF  L +PFALL G++S++M++
Sbjct: 122 GIFVGSAVPPLVFGVAFGNLLQGVPFHADAYLRLFYTGSFFQLLNPFALLVGVISLTMIL 181

Query: 185 LHGAAWITVKGEEGPVAERARRIGELAGLASIVLFAAGGFWVAFGGMGFRIEGLADAAGP 244
             GA ++ ++   G +  R+R   +++ L  +V F   G WV +G  G+ +    D    
Sbjct: 182 TQGATYLQMR-TVGELHMRSRAAAQISALVMMVCFVLAGVWVVYGIEGYVVVSTLDHNAA 240

Query: 245 SNPLRGAAAVREPGAWLDNYGRHGWMILAPVLGFAGAALALLGLRAKSAWMAFTGSSASA 304
           SNPL     VR+ GAWL N+ +   +   P LG     L +   R +   +AF  SS + 
Sbjct: 241 SNPL-NKQVVRQTGAWLVNFNQTPLLWSIPALGVVLPLLTVFCSRFEKGALAFVFSSLTL 299

Query: 305 VGIIATVGLSMFPFILPSSVDPRSSLTVWNASSSHLTLFIMLVVTIVFLPLVLAYTAWVY 364
             +IAT G++MFPFI+PSS  P  SLT+W+ +SS LTL IM V  I+F+P++LAYTAW Y
Sbjct: 300 ACVIATAGVAMFPFIMPSSTVPDISLTMWDTTSSFLTLKIMAVTAIIFVPIILAYTAWCY 359

Query: 365 KVLWGRSTTAALAVN 379
             + GR T   +  N
Sbjct: 360 YKMAGRLTKEQIEAN 374