Pairwise Alignments

Query, 383 a.a., cytochrome bd-type quinol oxidase, subunit 2 cydB from Caulobacter crescentus NA1000

Subject, 378 a.a., cytochrome d ubiquinol oxidase subunit II from Escherichia coli ECRC99

 Score =  368 bits (944), Expect = e-106
 Identities = 184/375 (49%), Positives = 248/375 (66%), Gaps = 5/375 (1%)

Query: 6   DFATLRVIWWALVGILLIGFALTDGFDMGVGALLPFVAKTDEERRMVINTVGATWEGNQV 65
           D+ TLR IWW L+G++L+ F ++DGFDMG+G LLP VA+ D+ERR+VIN+VGA WEGNQV
Sbjct: 3   DYETLRFIWWLLIGVILVVFMISDGFDMGIGCLLPLVARDDDERRIVINSVGAHWEGNQV 62

Query: 66  WFILGGGAIFAAWPFVYAISFSGFYLAMFVVLTAMILRPVGFKYRSKRQDPRWRAFWDWA 125
           W IL GGA+FAAWP VYA +FSGFY+AM +VL ++  RP+ F YR K  D RWR  WD  
Sbjct: 63  WLILAGGALFAAWPRVYAAAFSGFYVAMILVLCSLFFRPLAFDYRGKIADARWRKMWDAG 122

Query: 126 LFVGGFVPVLCFGVALGNVLQGAPFRLDSDLRAFYDGSFLGLFSPFALLCGLLSVSMLVL 185
           L +G  VP + FG+A GN+L G PF     LR  Y GSF  L +PF LLCGLLS+ M++L
Sbjct: 123 LVIGSLVPPVVFGIAFGNLLLGVPFAFTPQLRVEYLGSFWQLLTPFPLLCGLLSLGMVIL 182

Query: 186 HGAAWITVKGEEGPVAERARRIGELAGLASIVLFAAGGFWVAFGGMGFRIEGLADAAGPS 245
            G  W+ +K   G +  R++   + A L  ++ F   G+W+  G  GF +    DA GPS
Sbjct: 183 QGGVWLQLK-TVGVIHLRSQLSTKRAALLVMLCFLLAGYWLWVGIDGFVLLA-QDANGPS 240

Query: 246 NPLRGAAAVREPGAWLDNYGRHGWMILAPVLGFAGAALALLGL-RAKSAWMAFTGSSASA 304
           NPL    AV  PGAW++N+     + + P+LGF    L ++ + R +  W  F  +S   
Sbjct: 241 NPLMKLVAVL-PGAWMNNFVESPVLWIFPLLGFFCPLLTVMAIYRGRPGW-GFLMASLMQ 298

Query: 305 VGIIATVGLSMFPFILPSSVDPRSSLTVWNASSSHLTLFIMLVVTIVFLPLVLAYTAWVY 364
            G+I T G+++FPF++PSSV P SSLT+W+++SS LTL IMLV+ ++FLP+VL YT W Y
Sbjct: 299 FGVIFTAGITLFPFVMPSSVSPISSLTLWDSTSSQLTLSIMLVIVLIFLPIVLLYTLWSY 358

Query: 365 KVLWGRSTTAALAVN 379
             +WGR TT  L  N
Sbjct: 359 YKMWGRMTTETLRRN 373