Pairwise Alignments

Query, 383 a.a., cytochrome bd-type quinol oxidase, subunit 2 cydB from Caulobacter crescentus NA1000

Subject, 379 a.a., cytochrome d ubiquinol oxidase subunit II from Escherichia coli ECRC101

 Score =  365 bits (938), Expect = e-106
 Identities = 178/368 (48%), Positives = 240/368 (65%), Gaps = 2/368 (0%)

Query: 5   VDFATLRVIWWALVGILLIGFALTDGFDMGVGALLPFVAKTDEERRMVINTVGATWEGNQ 64
           +D+  LR IWW LVG+LLIGFA+TDGFDMGVG L  F+ + D ERR++IN++   W+GNQ
Sbjct: 2   IDYEVLRFIWWLLVGVLLIGFAVTDGFDMGVGMLTRFLGRNDTERRIMINSIAPHWDGNQ 61

Query: 65  VWFILGGGAIFAAWPFVYAISFSGFYLAMFVVLTAMILRPVGFKYRSKRQDPRWRAFWDW 124
           VW I  GGA+FAAWP VYA +FSGFY+AM +VL ++  RPVGF YRSK ++ RWR  WDW
Sbjct: 62  VWLITAGGALFAAWPMVYAAAFSGFYVAMILVLASLFFRPVGFDYRSKIEETRWRNMWDW 121

Query: 125 ALFVGGFVPVLCFGVALGNVLQGAPFRLDSDLRAFYDGSFLGLFSPFALLCGLLSVSMLV 184
            +F+G FVP L  GVA GN+LQG PF +D  LR +Y G+F  L +PF LL G++SV M++
Sbjct: 122 GIFIGSFVPPLVIGVAFGNLLQGVPFNVDEYLRLYYTGNFFQLLNPFGLLAGVVSVGMII 181

Query: 185 LHGAAWITVKGEEGPVAERARRIGELAGLASIVLFAAGGFWVAFGGMGFRIEGLADAAGP 244
             GA ++ ++   G +  R R   ++A L ++V FA  G WV +G  G+ ++   D    
Sbjct: 182 TQGATYLQMR-TVGELHLRTRATAQVAALVTLVCFALAGVWVMYGIDGYVVKSTMDHYAA 240

Query: 245 SNPLRGAAAVREPGAWLDNYGRHGWMILAPVLGFAGAALALLGLRAKSAWMAFTGSSASA 304
           SNPL     VRE GAWL N+     +   P LG     L +L  R   A  AF  SS + 
Sbjct: 241 SNPL-NKEVVREAGAWLVNFNNTPILWAIPALGVVLPLLTILTARMDKAAWAFVFSSLTL 299

Query: 305 VGIIATVGLSMFPFILPSSVDPRSSLTVWNASSSHLTLFIMLVVTIVFLPLVLAYTAWVY 364
             II T G++MFPF++PSS    +SLT+W+A+SS LTL +M  V +V +P++L YTAW Y
Sbjct: 300 ACIILTAGIAMFPFVMPSSTMMNASLTMWDATSSQLTLNVMTWVAVVLVPIILLYTAWCY 359

Query: 365 KVLWGRST 372
             ++GR T
Sbjct: 360 WKMFGRIT 367