Pairwise Alignments

Query, 413 a.a., hypothetical protein from Caulobacter crescentus NA1000

Subject, 389 a.a., membrane protein from Pseudomonas simiae WCS417

 Score =  124 bits (311), Expect = 5e-33
 Identities = 124/405 (30%), Positives = 176/405 (43%), Gaps = 57/405 (14%)

Query: 20  RHLSLDVLRGLGVMGILAVNAVAFGLPMPVYMSPELSPFGLAGAEASAWWVVQTFFHYKF 79
           R + +D LRG  + GILAVN  AF    P Y S   +P      +    +V+   F  KF
Sbjct: 5   RLVHVDALRGFALFGILAVNICAFA--DPYYASTLSNPDYAGTVDHVVRFVISLLFETKF 62

Query: 80  ITLFSILFGVSILL--VGGERTDKARGALLRRRLGWLLVIGLLHGLLIWFGDILLLYACT 137
             LFS LFG S  L     ER + A    + RR   LL +GL HG  +++G+IL  YA  
Sbjct: 63  YLLFSFLFGYSFTLQMAAAERANAAFAPRMVRRQLALLALGLAHGAALYYGEILSTYALL 122

Query: 138 GFVALLARSWTPRRLFTVSLTI--------LLLGSALAIAPLFLLESAPAELQQKIIAEM 189
           G V L AR+ +P + +   + +        +LLG   A+       S+P +   K++A  
Sbjct: 123 GLVLLAARNLSPAKAYRWGICLVVTACSAWMLLGVLQALEGNLTGVSSP-DAADKLVAFT 181

Query: 190 NQPGSGVDVAAATAAMRGGLVAALGENFKSWMILQPMSVIVFIWRTGALMLLGMALFKTG 249
              GS VD     +      V AL      W++  P +               +A+F  G
Sbjct: 182 ---GSAVDTLRFHSGHLWSTVQAL------WLLQGPSA---------------LAMFFFG 217

Query: 250 FLTGKAKTWVY----------LLLIALGGAGLAWTGWESSMKLATDFAEPQATGRYNMAY 299
           +  G+ +  V           LLLI L  AGL       +M  A   A     G    A+
Sbjct: 218 YAAGRRQLLVSPYAWQPRLSRLLLITLP-AGLL-----GAMIYALSAAYAPGGGLETFAF 271

Query: 300 EFASLPITL---GYASLAILLIRSRAIAGLLNPVARLGQMAFTNYLTQSLIMTTIFWSGR 356
               L   L    YA L + L  S A   L + +A +G+MA +NYL QS+++  +F SG 
Sbjct: 272 GVGQLTAPLLSAAYALLMLALFSSAAGPWLCHWLAPVGKMALSNYLLQSVLLGLLF-SGY 330

Query: 357 GLGLFGEFNRVELWGCVIAIWALQLIWSPLWLSRFSMGPMEWIWR 401
           G GL      + +    + I+ALQL  S  WL     GPMEW+ R
Sbjct: 331 GAGLINTLAPLLMLPVALGIFALQLWLSARWLRTHPYGPMEWLLR 375