Pairwise Alignments

Query, 347 a.a., 5-methylcytosine-specific restriction enzyme MRR from Caulobacter crescentus NA1000

Subject, 335 a.a., putative restriction endonuclease from Salmonella enterica subsp. enterica serovar Typhimurium str. MS1868

 Score = 92.0 bits (227), Expect = 2e-23
 Identities = 84/307 (27%), Positives = 135/307 (43%), Gaps = 20/307 (6%)

Query: 41  REAILRVLAATYPTEGANTLRNFAAQMNQFVNTIGVGDLVVLPRKVTSGVAIGRVTGPYR 100
           RE +        P   + T+R+ A+Q+ +FVN +  GD  +          IG++   + 
Sbjct: 42  REQLFTRYQELEPQTKSGTVRSGASQVWRFVNEMQKGDWAITYSPSNRTYLIGKIASDFE 101

Query: 101 HDPA---APIAHTRAVEWLNEAVPREAFAQDLRHSFGAFLTICEVKRNEALARVEAVLKT 157
                    +   R V+W  E + R++ +   R++ G+ LT+ +V        V+     
Sbjct: 102 FHAEWLEDGMGIARKVKWNAEEIKRDSLSDATRNTLGSTLTVFQVPDFAVNELVQ----- 156

Query: 158 GKDPGPLLGKQGVVTVKAPVEDAEAEDVE---LDVEDIARQQIIALIKSAFAGHDLAYLV 214
           GK P         V  + PV   E E V     D+E IA + I   I +     ++  LV
Sbjct: 157 GKKP------VSDVVPEVPVSGEEDEVVSNPLRDMEMIAFEGIKDRI-NRLDWDEMQNLV 209

Query: 215 AEILRIEGYVTKVSPPGPDGGVDILAAGGRLGLGEDRICVQVKSGDAPANQEVVLKLMGS 274
           A +LR  GY T+VSP G D   DI+A+    G    RI V+VK      + + +   +G 
Sbjct: 210 AGVLRSMGYKTQVSPAGADREKDIIASPDGFGFENPRIIVEVKHRREQMSSQQIRSFIGG 269

Query: 275 VQAAKARTGLLVSIAGVNGPAQKLIDSEFFSVRLWQMPELLTALFASYGQLSDETRAKIP 334
               K   GL VS  G +  A+   D     + LW + +L+ AL  +Y Q+  ET+  +P
Sbjct: 270 --RHKDDRGLYVSTGGFSKDARYEADRSTIPLTLWTLDDLVRALVENYEQVDIETKLLVP 327

Query: 335 LKQIWAP 341
           LK+ + P
Sbjct: 328 LKKTYLP 334