Pairwise Alignments

Query, 1396 a.a., DNA-directed RNA polymerase beta from Caulobacter crescentus NA1000

Subject, 1411 a.a., DNA-directed RNA polymerase beta' subunit (EC 2.7.7.6) from Variovorax sp. SCN45

 Score = 1621 bits (4197), Expect = 0.0
 Identities = 843/1403 (60%), Positives = 1050/1403 (74%), Gaps = 28/1403 (1%)

Query: 3    QEVLNIFNPVQAAPTFDQIRISLASPEKIRSWSFGEIKKPETINYRTFKPERDGLFCARI 62
            + +L++F        FD I+I +ASPEKIRSWSFGE+KKPETINYRTFKPERDGLFCA+I
Sbjct: 2    KSLLDLFKQFTPDEHFDAIKIGMASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAKI 61

Query: 63   FGPTKDYECLCGKYKRMKYKGIICEKCGVEVTLARVRRERMGHIELASPVAHIWFLKSLP 122
            FGP KDYECLCGKYKR+K++G+ICEKCGVEVT  +VRRERMGHI+LA+P AHIWFLKSLP
Sbjct: 62   FGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIDLAAPCAHIWFLKSLP 121

Query: 123  SRIAMMLDMPLKDIERVLYFEYYIVTEPGLTPLKQHQLLSEDDYMRAQEEYGDDSFTAEI 182
            SR+ ++LDM L+DIERVLYFE Y++T+PG+TPLK+  ++SEDDY   ++EYGD+ F A++
Sbjct: 122  SRLGLVLDMTLRDIERVLYFEAYVITDPGMTPLKKFGIMSEDDYDAKRKEYGDE-FIAKM 180

Query: 183  GAEAIQNLLKAIDLEKEAERLREELSGTVSDMKQKKFSKRLKILEAFQESGNRPEWMVLT 242
            GAE I++LL+ I+L+ E ERLR +L+G  S++K KK SKRLK+LEAF++SG +PEWMVL 
Sbjct: 181  GAEGIKDLLEGIELDSEIERLRGDLTG--SEVKVKKNSKRLKVLEAFRKSGIKPEWMVLD 238

Query: 243  VVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRMLQ 302
            V+PV+PP+LRPLVPLDGGRFATSDLNDLYRRVINRN+RL+RL+EL+AP+II RNEKRMLQ
Sbjct: 239  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNSRLRRLLELKAPEIIARNEKRMLQ 298

Query: 303  ESVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPE 362
            E+VD+L DNGRRG+ +TGANKR LKSLADM+KGK GRFRQNLLGKRVDYSGRSVIVVGP 
Sbjct: 299  EAVDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPT 358

Query: 363  LKLHECGLPKKMALELFKPFIYARLDAKGLSGTVKQSKRMVEREQPQVWDILEEVIREHP 422
            LKLH+CGLPK MALELFKPFI++RL+A G++ T+K +K+ VE   P VWDILEEVI+EHP
Sbjct: 359  LKLHQCGLPKLMALELFKPFIFSRLEAMGIATTIKAAKKEVESGTPVVWDILEEVIKEHP 418

Query: 423  VLLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEA 482
            V+LNRAPTLHRLGIQAFEP LIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLS+EAQ+EA
Sbjct: 419  VMLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSVEAQMEA 478

Query: 483  RVLMMSTNNILSPANGRPIIVPSQDIVLGLYYLSVARDGEPGEGKIFADLGEIEAAMDAG 542
            R LM+++NN+L PA+G P IVPSQD+VLGLYY +  R    GEG IF+D+GE++ A+DA 
Sbjct: 479  RTLMLASNNVLFPASGEPSIVPSQDVVLGLYYTTRDRINGKGEGLIFSDIGEVQRALDAN 538

Query: 543  VVSLHAKIKARHTEMTP-----EGVLLRKVIDTTPGRMKIAALLPHHPQIGHRLIEKALT 597
             V L A++  R TE T      E      ++DTT GR  ++ +LP      +  I KAL 
Sbjct: 539  EVELTARVAVRITEYTKNKETGEFTPSTSLVDTTVGRALLSEILPKGLPFSN--INKALK 596

Query: 598  KKEIGNLIDIVYRHCGQKATVIFADKVMGLGFKEAAKAGISFGKDDIIIPVRKTAIVEET 657
            KKEI  LI++ +R CG K TV+FADK++  GF+ A KAGIS   DD+++P  K  I++ +
Sbjct: 597  KKEISKLINVSFRKCGLKETVVFADKLLQNGFRLATKAGISIAIDDMLVPAEKHGIIDRS 656

Query: 658  RKLAEEYEQQYADGLITKGEKYNKVVDAWAKATDRVADEMMAEL-QMKHKDENGREKE-- 714
             K  +E EQQY  GL+T GE+YNKVVD W KA D V+  MMA+L + K  D +G+E E  
Sbjct: 657  AKEVKEIEQQYVSGLVTSGERYNKVVDIWGKAGDEVSKVMMAKLSKQKVIDRHGKEVEQE 716

Query: 715  -INAIYMMAHSGARGSQAQMKQLGGMRGLMAKPSGEIIETPIVSNFKEGLTVQEYFNSTH 773
              N+IYMMA SGARGS AQ++Q+ GMRGLMAKP G IIETPI +NF+EGL V EYF STH
Sbjct: 717  SFNSIYMMADSGARGSAAQIRQVAGMRGLMAKPDGSIIETPITANFREGLNVLEYFISTH 776

Query: 774  GARKGLADTALKTANSGYLTRRLVDVAQDCIIVEEDCGTTKGITLRAVVEGGDVLVSLGS 833
            GARKGLADTALKTANSGYLTRRLVDV QD ++ E+DCGT  G  +RA+VEGG+V+ SL  
Sbjct: 777  GARKGLADTALKTANSGYLTRRLVDVTQDLVVTEQDCGTHGGYLMRAIVEGGEVIESLRD 836

Query: 834  RVLGRFTAEDVKDPGTGELVVPADTYIDENIADAIEAAVVQSVKVRSVLTCEAKIGVCGA 893
            R+LGR  A+DV  P    +++ A    DE+  +A+EA  V  VKVR+ LTCE + G+C  
Sbjct: 837  RILGRSAADDVLHPENRSVLLKAGEMFDEDNIEALEAQGVDEVKVRTALTCETRFGICAT 896

Query: 894  CYGRDLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGTA-QVAEQSFFEASNEGT 952
            CYGRDL RG  +NIGEAVGVIAAQSIGEPGTQLTMRTFHIGG A + A  S  EA + G+
Sbjct: 897  CYGRDLGRGGLINIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAIASSVEAKSNGS 956

Query: 953  V--RVIGPTVVGSDGALVIMSRNTSVSVLVD-GKERETYKPPYGARLRVKDGDLVKRGQR 1009
            +        V  S G LV++SR+  + +  + G+ERE +K PYGA L VK    +K G  
Sbjct: 957  IGFNATMRYVTNSKGELVVISRSGEIVIHDEHGRERERHKVPYGATLTVKADQQIKAGHV 1016

Query: 1010 LGDWDPYTTPIITEVAGKIRAEDLVDGLSIREEVDEATGIAQRVVADWRTSARGSDLRPA 1069
            L +WDP T PIITE AGK + E++ +GL++ ++VDE TG++  VV D +       +RP 
Sbjct: 1017 LANWDPLTRPIITEFAGKTQFENVEEGLTVAKQVDEVTGLSTLVVIDPKRRGAAKVVRPQ 1076

Query: 1070 MGVLSEDGSYKRLSNGGEARYL-LSAGAILSVADGDEVKPGEVIARIPTEGAKTRDITGG 1128
            + ++   G   ++     +  +    GA++ + DG +V PGEV+ARIP EG KTRDITGG
Sbjct: 1077 VKLIDAQGQEVKIPGTDHSVTIGFPIGALVQIRDGQDVGPGEVLARIPVEGQKTRDITGG 1136

Query: 1129 LPRVAELFEARRPKDCAVIAEMDGRVEFGKDYKNKRRIKITPDVDADGNQPEAVEFLIPK 1188
            LPRVAELFEAR PKD  ++AEM G V FGK+ K K R++IT   D +G      E L+PK
Sbjct: 1137 LPRVAELFEARSPKDKGMLAEMTGTVSFGKETKGKIRLQIT---DPEGT---VWEDLVPK 1190

Query: 1189 GKHIAVHDGDYITKGEYIIDGNPDPHDILRILGVEALANFLVDEIQEVYRLQGVPINDKH 1248
             K+I VH+G  + KGE ++DG  DP DILR+LG E LA ++VDE+Q+VYRLQGV INDKH
Sbjct: 1191 EKNILVHEGQVVNKGESVVDGPADPQDILRLLGSEELARYIVDEVQDVYRLQGVKINDKH 1250

Query: 1249 IETIVRQMLQKVEILEPGDTGLIKGDHLDKPEFDKEQEKAIARGGRPAVTQPVLLGITKA 1308
            IE IVRQML++V +   G+TG I G+ +++ E     +   A G  PA    +LLGITKA
Sbjct: 1251 IEVIVRQMLRRVVVDNIGETGYISGEQVERSEMLNTNDALRAEGKIPATFTNLLLGITKA 1310

Query: 1309 SLQTKSFISAASFQETTRVLTEASVHGKTDTLEGLKENVIVGRLIPAGTGSYLRSLQRVA 1368
            SL T SFISAASFQETTRVLTEA++ GK D L GLKENVIVGRLIPAGTG      ++V 
Sbjct: 1311 SLSTDSFISAASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGMAYHQARKVK 1370

Query: 1369 AKRDEQLAQQREDAMEPLPAEIA 1391
               DE    +R    E   AE+A
Sbjct: 1371 DAMDE---AERRAIAESEAAELA 1390