Pairwise Alignments

Query, 1396 a.a., DNA-directed RNA polymerase beta from Caulobacter crescentus NA1000

Subject, 1399 a.a., DNA-directed RNA polymerase subunit beta' from Pseudomonas fluorescens SBW25

 Score = 1649 bits (4269), Expect = 0.0
 Identities = 866/1411 (61%), Positives = 1058/1411 (74%), Gaps = 37/1411 (2%)

Query: 3    QEVLNIFNPVQAAPTFDQIRISLASPEKIRSWSFGEIKKPETINYRTFKPERDGLFCARI 62
            +++LN+         FD IRI LASPE IRSWSFGE+KKPETINYRTFKPERDGLFCA+I
Sbjct: 2    KDLLNLLKNQGQVEEFDAIRIGLASPEMIRSWSFGEVKKPETINYRTFKPERDGLFCAKI 61

Query: 63   FGPTKDYECLCGKYKRMKYKGIICEKCGVEVTLARVRRERMGHIELASPVAHIWFLKSLP 122
            FGP KDYECLCGKYKR+K++G+ICEKCGVEV LA+VRRERM HIELASPVAHIWFLKSLP
Sbjct: 62   FGPVKDYECLCGKYKRLKHRGVICEKCGVEVALAKVRRERMAHIELASPVAHIWFLKSLP 121

Query: 123  SRIAMMLDMPLKDIERVLYFEYYIVTEPGLTPLKQHQLLSEDDYMRAQEEYGDDSFTAEI 182
            SRI +++DM L+DIERVLYFE Y+V +PG+T L++ QLL+++ Y  A EE+GDD F A +
Sbjct: 122  SRIGLLMDMTLRDIERVLYFESYVVIDPGMTTLEKGQLLNDEQYFEALEEFGDD-FDARM 180

Query: 183  GAEAIQNLLKAIDLEKEAERLREELSGTVSDMKQKKFSKRLKILEAFQESGNRPEWMVLT 242
            GAEA++ LL AIDLE E  RLREE+  T S+ K KK SKRLK++EAFQ SGN PEWMVLT
Sbjct: 181  GAEAVRELLHAIDLEHEIGRLREEIPQTNSETKIKKLSKRLKLMEAFQGSGNLPEWMVLT 240

Query: 243  VVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRMLQ 302
            V+PV+PP+LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL++L APDII+RNEKRMLQ
Sbjct: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLSAPDIIVRNEKRMLQ 300

Query: 303  ESVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPE 362
            E+VDAL DNGRRGR ITG+NKRPLKSLADM+KGKQGRFRQNLLGKRVDYSGRSVI VGP 
Sbjct: 301  EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPT 360

Query: 363  LKLHECGLPKKMALELFKPFIYARLDAKGLSGTVKQSKRMVEREQPQVWDILEEVIREHP 422
            L+LH+CGLPKKMALELFKPFI+ +L+ +GL+ T+K +K+MVERE P+VWD+L EVIREHP
Sbjct: 361  LRLHQCGLPKKMALELFKPFIFGKLEMRGLATTIKAAKKMVERELPEVWDVLAEVIREHP 420

Query: 423  VLLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEA 482
            VLLNRAPTLHRLGIQAFEP LIEGKAIQLHPLVCAA+NADFDGDQMAVHVPL+LEAQLEA
Sbjct: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480

Query: 483  RVLMMSTNNILSPANGRPIIVPSQDIVLGLYYLSVARDGEPGEGKIFADLGEIEAAMDAG 542
            R LMMSTNNILSPANG PIIVPSQD+VLGLYY++       GEG++FADL E++    AG
Sbjct: 481  RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTREAINAKGEGRVFADLQEVDRVFRAG 540

Query: 543  VVSLHAKIKARHTEMTPE----GVLLRKVIDTTPGRMKIAALLPHHPQIGHRLIEKALTK 598
              +LHAK+K R  E   +     V   +++DTT GR  +  ++P    + + ++   + K
Sbjct: 541  EAALHAKVKVRINETVNDRDGGSVTNTRIVDTTVGRALLYQVVP--KGLSYDVVNLPMKK 598

Query: 599  KEIGNLIDIVYRHCGQKATVIFADKVMGLGFKEAAKAGISFGKDDIIIPVRKTAIVEETR 658
            K I  LI+  YR  G K TVIFAD++M  GF  +  +G+S G +D +IP  K  I+    
Sbjct: 599  KAISKLINQCYRVVGLKETVIFADQLMYTGFAYSTISGVSIGVNDFVIPDEKAQIIGAAT 658

Query: 659  KLAEEYEQQYADGLITKGEKYNKVVDAWAKATDRVADEMMAEL-QMKHKDENGRE---KE 714
               +E E QYA GL+T+GEKYNKV+D W+KA D V+  MMA L + K  D +G E   + 
Sbjct: 659  DEVKEIESQYASGLVTQGEKYNKVIDLWSKANDEVSKAMMANLSKEKVIDRHGVEVDQES 718

Query: 715  INAIYMMAHSGARGSQAQMKQLGGMRGLMAKPSGEIIETPIVSNFKEGLTVQEYFNSTHG 774
             N++YMMA SGARGS AQ++QL GMRGLMAKP G IIETPI +NF+EGL+V +YF STHG
Sbjct: 719  FNSMYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLSVLQYFISTHG 778

Query: 775  ARKGLADTALKTANSGYLTRRLVDVAQDCIIVEEDCGTTKGITLRAVVEGGDVLVSLGSR 834
            ARKGLADTALKTANSGYLTRRLVDVAQD ++ E DCGT  G+ +   +EGGDV+  LG R
Sbjct: 779  ARKGLADTALKTANSGYLTRRLVDVAQDLVVTEVDCGTEHGLLMTPHIEGGDVVEPLGER 838

Query: 835  VLGRFTAEDVKDPGTGELVVPADTYIDENIADAIEAAVVQSVKVRSVLTCEAKIGVCGAC 894
            VLGR  A DV  PGT E++VPA T +DE   + IE   +  V VRS ++CE + G+C  C
Sbjct: 839  VLGRVIARDVFKPGTEEIIVPAGTLVDEKWVEFIELNSIDEVIVRSPISCETRYGICAKC 898

Query: 895  YGRDLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGTA-QVAEQSFFEASNEGTV 953
            YGRDLARG  VNIGEAVGVIAAQSIGEPGTQLTMRTFHIGG A + +     +  N GTV
Sbjct: 899  YGRDLARGHQVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRTSAADSVQVKNGGTV 958

Query: 954  RVIG-PTVVGSDGALVIMSRNTSVSVLVD-GKERETYKPPYGARLRVKDGDLVKRGQRLG 1011
            R+     V   DG LV +SR+  +++  D G+ERE YK PYGA + VK+GD V  G  + 
Sbjct: 959  RLHNLKHVERVDGHLVAVSRSGELAIADDYGRERERYKLPYGAVISVKEGDKVDAGAIVA 1018

Query: 1012 DWDPYTTPIITEVAGKIRAEDLVDGLSIREEVDEATGIAQRVVADWR-TSARGSDLRPAM 1070
             WDP+T PI+TE+ G +    + +G++I+ + DE TG+    V D +   A G D+RPA+
Sbjct: 1019 KWDPHTHPIVTEMKGTVTYVGMEEGITIKRQTDELTGMTNIEVLDAKDRPAAGKDIRPAV 1078

Query: 1071 GVLSEDGSYKRLSNGGE-ARYLLSAGAILSVADGDEVKPGEVIARIPTEGAKTRDITGGL 1129
             ++ ++G    L      A+Y L A A++ VADG ++  G+VIARIP E +KTRDITGGL
Sbjct: 1079 KMVDDNGKDLLLPGTDVIAQYFLPANALVGVADGAKIAIGDVIARIPQETSKTRDITGGL 1138

Query: 1130 PRVAELFEARRPKDCAVIAEMDGRVEFGKDYKNKRRIKITPDVDADGNQPEAVEFLIPKG 1189
            PRVA+LFEARRPK+ +++AE+ G + FGK+ K KRR+ ITP+   DG+ P   E LIPK 
Sbjct: 1139 PRVADLFEARRPKEASILAEVSGTIAFGKETKGKRRLVITPN---DGSDP--YEELIPKW 1193

Query: 1190 KHIAVHDGDYITKGEYIIDGNPDPHDILRILGVEALANFLVDEIQEVYRLQGVPINDKHI 1249
            +H+ V +G+ + +GE I DG  DPHDILR+LGV ALA ++V+EIQ+VYRLQGV INDKHI
Sbjct: 1194 RHLNVFEGEQVNRGEVISDGPSDPHDILRLLGVSALAKYIVNEIQDVYRLQGVKINDKHI 1253

Query: 1250 ETIVRQMLQKVEILEPGDTGLIKGDHLDKPEFDKEQEKAIARGGRPAVTQPVLLGITKAS 1309
            ETI+RQML+KVEI E GD+  IKGD ++      E E+  A     +    VLLGITKAS
Sbjct: 1254 ETILRQMLRKVEIAESGDSSFIKGDQMELTHVLVENERLGAEDKFVSKFTRVLLGITKAS 1313

Query: 1310 LQTKSFISAASFQETTRVLTEASVHGKTDTLEGLKENVIVGRLIPAGTGSYLRSLQRVAA 1369
            L T+SFISAASFQETTRVLTEA+V GK D L GLKENV+VGRLIPAGTG    S ++   
Sbjct: 1314 LSTESFISAASFQETTRVLTEAAVTGKRDYLRGLKENVVVGRLIPAGTGLAYHSERK--- 1370

Query: 1370 KRDEQLAQQREDAMEPL-----PAEIALSDA 1395
                    +R DA +PL       E AL++A
Sbjct: 1371 --------RRRDADKPLRVSASEVEAALTEA 1393