Pairwise Alignments

Query, 1396 a.a., DNA-directed RNA polymerase beta from Caulobacter crescentus NA1000

Subject, 1413 a.a., DNA-directed RNA polymerase subunit beta' from Paraburkholderia sabiae LMG 24235

 Score = 1622 bits (4201), Expect = 0.0
 Identities = 835/1402 (59%), Positives = 1046/1402 (74%), Gaps = 31/1402 (2%)

Query: 5    VLNIFNPVQAAPTFDQIRISLASPEKIRSWSFGEIKKPETINYRTFKPERDGLFCARIFG 64
            +L++F  VQ    FD I+I LASP+KIRSWSFGE+KKPETINYRTFKPERDGLFCA+IFG
Sbjct: 4    LLDLFKQVQQEEVFDAIKIGLASPDKIRSWSFGEVKKPETINYRTFKPERDGLFCAKIFG 63

Query: 65   PTKDYECLCGKYKRMKYKGIICEKCGVEVTLARVRRERMGHIELASPVAHIWFLKSLPSR 124
            P KDYECLCGKYKR+K++G+ICEKCGVEVTLA+VRRERMGHIELASPVAHIWFLKSLPSR
Sbjct: 64   PIKDYECLCGKYKRLKHRGVICEKCGVEVTLAKVRRERMGHIELASPVAHIWFLKSLPSR 123

Query: 125  IAMMLDMPLKDIERVLYFEYYIVTEPGLTPLKQHQLLSEDDYMRAQEEYGDDSFTAEIGA 184
            + M+LDM L+DIERVLYFE Y+V +PG+TPLK  Q+++E+DY    EEYGD+ F AE+GA
Sbjct: 124  LGMVLDMTLRDIERVLYFEAYVVIDPGMTPLKARQIMTEEDYYNKVEEYGDE-FRAEMGA 182

Query: 185  EAIQNLLKAIDLEKEAERLREELSGTVSDMKQKKFSKRLKILEAFQESGNRPEWMVLTVV 244
            E ++ LL+AI+++++ E LR EL  T S+ K KK++KRLK+LEAFQ SG +PEWM+L V+
Sbjct: 183  EGVRELLRAINIDEQVETLRSELKNTGSEAKIKKYAKRLKVLEAFQRSGIKPEWMILEVL 242

Query: 245  PVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRMLQES 304
            PV+PPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL+EL+AP+II+RNEKRMLQE+
Sbjct: 243  PVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQEA 302

Query: 305  VDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPELK 364
            VD+L DNGRRG+ +TGANKRPLKSLADM+KGK GRFRQNLLGKRVDYSGRSVIVVGP LK
Sbjct: 303  VDSLLDNGRRGKAMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPTLK 362

Query: 365  LHECGLPKKMALELFKPFIYARLDAKGLSGTVKQSKRMVEREQPQVWDILEEVIREHPVL 424
            LH+CGLPK MALELFKPFI+ +L+  G++ T+K +K+ VE + P VWDILEEVIREHPV+
Sbjct: 363  LHQCGLPKLMALELFKPFIFNKLEVMGVATTIKAAKKEVENQTPVVWDILEEVIREHPVM 422

Query: 425  LNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEARV 484
            LNRAPTLHRLGIQAFEP LIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQ+EAR 
Sbjct: 423  LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQMEART 482

Query: 485  LMMSTNNILSPANGRPIIVPSQDIVLGLYYLSVARDGEPGEGKIFADLGEIEAAMDAGVV 544
            LM+++NN+L PANG P IVPSQDIVLGLYY +       GEG  F  + E   A +   V
Sbjct: 483  LMLASNNVLFPANGDPSIVPSQDIVLGLYYATREAINGKGEGMTFTGVSEALRAYENKEV 542

Query: 545  SLHAKIKARHTEM---------TPEGVLLRKVIDTTPGRMKIAALLPHHPQIGHRLIEKA 595
             L +++  R TEM          P+ V    +  TT GR  ++ +LP  P +   ++ K 
Sbjct: 543  ELASRVNVRITEMVHNEDTSEGAPKFVPKITLYATTVGRSILSEILP--PGLPFSVLNKP 600

Query: 596  LTKKEIGNLIDIVYRHCGQKATVIFADKVMGLGFKEAAKAGISFGKDDIIIPVRKTAIVE 655
            L KKEI  LI+  +R CG + TVIFAD++M  GF+ A +AGIS   DD+++P +K  IV 
Sbjct: 601  LKKKEISRLINTAFRKCGLRETVIFADQLMQSGFRLATRAGISICVDDMLVPPQKETIVG 660

Query: 656  ETRKLAEEYEQQYADGLITKGEKYNKVVDAWAKATDRVADEMMAELQMK---HKDEN-GR 711
            +  K  +EY++QY  GL+T  E+YN VVD W+  ++ V   MM +L  +    +D N  R
Sbjct: 661  DAAKKVKEYDRQYMSGLVTAQERYNNVVDIWSATSEAVGKAMMEQLATEPVVDRDGNETR 720

Query: 712  EKEINAIYMMAHSGARGSQAQMKQLGGMRGLMAKPSGEIIETPIVSNFKEGLTVQEYFNS 771
            ++  N+IYMMA SGARGS  Q++QL GMRGLMAKP G IIETPI +NF+EGL V +YF S
Sbjct: 721  QESFNSIYMMADSGARGSAVQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFIS 780

Query: 772  THGARKGLADTALKTANSGYLTRRLVDVAQDCIIVEEDCGTTKGITLRAVVEGGDVLVSL 831
            THGARKGLADTALKTANSGYLTRRLVDV QD ++VE+DCGT+ G+ ++A+VEGG+V+ +L
Sbjct: 781  THGARKGLADTALKTANSGYLTRRLVDVTQDLVVVEDDCGTSNGVAMKALVEGGEVVEAL 840

Query: 832  GSRVLGRFTAEDVKDPGTGELVVPADTYIDENIADAIEAAVVQSVKVRSVLTCEAKIGVC 891
              R+LGR    DV +P T E +  A + +DE+  + IE   +  V+VR+ LTCE + G+C
Sbjct: 841  RDRILGRVAVADVVNPETQETLYEAGSLLDEDSVEEIERLGIDEVRVRTPLTCETRYGLC 900

Query: 892  GACYGRDLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGTA-QVAEQSFFEASNE 950
             +CYGRDL RG+ VN+GEAVGVIAAQSIGEPGTQLTMRTFHIGG A + A  S  EA + 
Sbjct: 901  ASCYGRDLGRGSLVNVGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSN 960

Query: 951  GTVRVIGPT--VVGSDGALVIMSRNTSVSVLVD-GKERETYKPPYGARLRVKDGDLVKRG 1007
            GTVR       V  + G  +++SR+    +  D G+ERE +K PYGA L   DG  +K G
Sbjct: 961  GTVRFTATMRYVTNAKGEQIVISRSGEALITDDHGRERERHKVPYGATLLQLDGAQIKAG 1020

Query: 1008 QRLGDWDPYTTPIITEVAGKIRAEDLVDGLSIREEVDEATGIAQRVVAD--WRTSARGSD 1065
             +L  WDP T PIITE  G ++ E++ +G+++ +++D+ TG++  VV D   R S     
Sbjct: 1021 TQLATWDPLTRPIITEWGGTVKFENVEEGVTVAKQIDDVTGLSTLVVIDVKRRGSQASKS 1080

Query: 1066 LRPAMGVLSEDGSYKRLSNGGEARYL-LSAGAILSVADGDEVKPGEVIARIPTEGAKTRD 1124
            +RP + +L  +G   ++ N   +  +    GA+++V DG +V+ GEV+ARIPTE  KTRD
Sbjct: 1081 VRPQVKLLDANGEEVKIPNSEHSVQIGFQVGALITVKDGQQVQVGEVLARIPTEAQKTRD 1140

Query: 1125 ITGGLPRVAELFEARRPKDCAVIAEMDGRVEFGKDYKNKRRIKITPDVDADGNQPEAVEF 1184
            ITGGLPRVAELFEAR PKD  ++AE+ G   FGKD K K+R+ IT   D +GNQ    EF
Sbjct: 1141 ITGGLPRVAELFEARSPKDAGILAEVTGTTSFGKDTKGKQRLVIT---DLEGNQH---EF 1194

Query: 1185 LIPKGKHIAVHDGDYITKGEYIIDGNPDPHDILRILGVEALANFLVDEIQEVYRLQGVPI 1244
            LI K K + VHDG  + KGE I+DG  DPHDILR+ G+EAL+ ++VDE+Q+VYRLQGV I
Sbjct: 1195 LIAKEKQVLVHDGQVVNKGEMIVDGPADPHDILRLQGIEALSRYIVDEVQDVYRLQGVKI 1254

Query: 1245 NDKHIETIVRQMLQKVEILEPGDTGLIKGDHLDKPEFDKEQEKAIARGGRPAVTQPVLLG 1304
            NDKHIE IVRQML++V+I + GDT  I G+ +++ +   E ++  A   RPA  + +LLG
Sbjct: 1255 NDKHIEVIVRQMLRRVQISDNGDTRFIPGEQVERSDMLDENDRMNAEDKRPATYENILLG 1314

Query: 1305 ITKASLQTKSFISAASFQETTRVLTEASVHGKTDTLEGLKENVIVGRLIPAGTGSYLRSL 1364
            ITKASL T SFISAASFQETTRVLTEA++ GK D L GLKENVIVGRLIPAGTG      
Sbjct: 1315 ITKASLSTDSFISAASFQETTRVLTEAAIMGKRDDLRGLKENVIVGRLIPAGTGLAFHKA 1374

Query: 1365 QRVAAKRDEQLAQQ--REDAME 1384
            ++     D +   Q   E+A E
Sbjct: 1375 RKTKEMADRERFDQIAAEEAFE 1396