Pairwise Alignments

Query, 1396 a.a., DNA-directed RNA polymerase beta from Caulobacter crescentus NA1000

Subject, 1407 a.a., DNA-directed RNA polymerase subunit beta' (NCBI) from Escherichia coli BW25113

 Score = 1624 bits (4206), Expect = 0.0
 Identities = 845/1400 (60%), Positives = 1053/1400 (75%), Gaps = 24/1400 (1%)

Query: 3    QEVLNIFNPVQAAPTFDQIRISLASPEKIRSWSFGEIKKPETINYRTFKPERDGLFCARI 62
            +++L           FD I+I+LASP+ IRSWSFGE+KKPETINYRTFKPERDGLFCARI
Sbjct: 2    KDLLKFLKAQTKTEEFDAIKIALASPDMIRSWSFGEVKKPETINYRTFKPERDGLFCARI 61

Query: 63   FGPTKDYECLCGKYKRMKYKGIICEKCGVEVTLARVRRERMGHIELASPVAHIWFLKSLP 122
            FGP KDYECLCGKYKR+K++G+ICEKCGVEVT  +VRRERMGHIELASP AHIWFLKSLP
Sbjct: 62   FGPVKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRERMGHIELASPTAHIWFLKSLP 121

Query: 123  SRIAMMLDMPLKDIERVLYFEYYIVTEPGLTPLKQHQLLSEDDYMRAQEEYGDDSFTAEI 182
            SRI ++LDMPL+DIERVLYFE Y+V E G+T L++ Q+L+E+ Y+ A EE+GD+ F A++
Sbjct: 122  SRIGLLLDMPLRDIERVLYFESYVVIEGGMTNLERQQILTEEQYLDALEEFGDE-FDAKM 180

Query: 183  GAEAIQNLLKAIDLEKEAERLREELSGTVSDMKQKKFSKRLKILEAFQESGNRPEWMVLT 242
            GAEAIQ LLK++DLE+E E+LREEL+ T S+ K+KK +KR+K+LEAF +SGN+PEWM+LT
Sbjct: 181  GAEAIQALLKSMDLEQECEQLREELNETNSETKRKKLTKRIKLLEAFVQSGNKPEWMILT 240

Query: 243  VVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRMLQ 302
            V+PV+PP+LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRL++L APDII+RNEKRMLQ
Sbjct: 241  VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLAAPDIIVRNEKRMLQ 300

Query: 303  ESVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVGPE 362
            E+VDAL DNGRRGR ITG+NKRPLKSLADM+KGKQGRFRQNLLGKRVDYSGRSVI VGP 
Sbjct: 301  EAVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVITVGPY 360

Query: 363  LKLHECGLPKKMALELFKPFIYARLDAKGLSGTVKQSKRMVEREQPQVWDILEEVIREHP 422
            L+LH+CGLPKKMALELFKPFIY +L+ +GL+ T+K +K+MVERE+  VWDIL+EVIREHP
Sbjct: 361  LRLHQCGLPKKMALELFKPFIYGKLELRGLATTIKAAKKMVEREEAVVWDILDEVIREHP 420

Query: 423  VLLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLEA 482
            VLLNRAPTLHRLGIQAFEP LIEGKAIQLHPLVCAA+NADFDGDQMAVHVPL+LEAQLEA
Sbjct: 421  VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTLEAQLEA 480

Query: 483  RVLMMSTNNILSPANGRPIIVPSQDIVLGLYYLSVARDGEPGEGKIFADLGEIEAAMDAG 542
            R LMMSTNNILSPANG PIIVPSQD+VLGLYY++       GEG +     E E    +G
Sbjct: 481  RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRDCVNAKGEGMVLTGPKEAERLYRSG 540

Query: 543  VVSLHAKIKARHTEMTPE--GVLLRK--VIDTTPGRMKIAALLPHHPQIGHRLIEKALTK 598
            + SLHA++K R TE   +  G L+ K  + DTT GR  +  ++P    + + ++ +AL K
Sbjct: 541  LASLHARVKVRITEYEKDANGELVAKTSLKDTTVGRAILWMIVP--KGLPYSIVNQALGK 598

Query: 599  KEIGNLIDIVYRHCGQKATVIFADKVMGLGFKEAAKAGISFGKDDIIIPVRKTAIVEETR 658
            K I  +++  YR  G K TVIFAD++M  GF  AA++G S G DD++IP +K  I+ E  
Sbjct: 599  KAISKMLNTCYRILGLKPTVIFADQIMYTGFAYAARSGASVGIDDMVIPEKKHEIISEAE 658

Query: 659  KLAEEYEQQYADGLITKGEKYNKVVDAWAKATDRVADEMMAELQ----MKHKDENGREKE 714
                E ++Q+  GL+T GE+YNKV+D WA A DRV+  MM  LQ    +    +  ++  
Sbjct: 659  AEVAEIQEQFQSGLVTAGERYNKVIDIWAAANDRVSKAMMDNLQTETVINRDGQEEKQVS 718

Query: 715  INAIYMMAHSGARGSQAQMKQLGGMRGLMAKPSGEIIETPIVSNFKEGLTVQEYFNSTHG 774
             N+IYMMA SGARGS AQ++QL GMRGLMAKP G IIETPI +NF+EGL V +YF STHG
Sbjct: 719  FNSIYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHG 778

Query: 775  ARKGLADTALKTANSGYLTRRLVDVAQDCIIVEEDCGTTKGITLRAVVEGGDVLVSLGSR 834
            ARKGLADTALKTANSGYLTRRLVDVAQD ++ E+DCGT +GI +  V+EGGDV   L  R
Sbjct: 779  ARKGLADTALKTANSGYLTRRLVDVAQDLVVTEDDCGTHEGIMMTPVIEGGDVKEPLRDR 838

Query: 835  VLGRFTAEDVKDPGTGELVVPADTYIDENIADAIEAAVVQSVKVRSVLTCEAKIGVCGAC 894
            VLGR TAEDV  PGT +++VP +T + E   D +E   V +VKVRSV++C+   GVC  C
Sbjct: 839  VLGRVTAEDVLKPGTADILVPRNTLLHEQWCDLLEENSVDAVKVRSVVSCDTDFGVCAHC 898

Query: 895  YGRDLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGTA-QVAEQSFFEASNEGTV 953
            YGRDLARG  +N GEA+GVIAAQSIGEPGTQLTMRTFHIGG A + A +S  +  N+G++
Sbjct: 899  YGRDLARGHIINKGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAESSIQVKNKGSI 958

Query: 954  RVIG-PTVVGSDGALVIMSRNTSVSVLVD-GKERETYKPPYGARLRVKDGDLVKRGQRLG 1011
            ++    +VV S G LVI SRNT + ++ + G+ +E+YK PYGA L   DG+ V  G+ + 
Sbjct: 959  KLSNVKSVVNSSGKLVITSRNTELKLIDEFGRTKESYKVPYGAVLAKGDGEQVAGGETVA 1018

Query: 1012 DWDPYTTPIITEVAGKIRAEDLVDGLSIREEVDEATGIAQRVVAD-WRTSARGSDLRPAM 1070
            +WDP+T P+ITEV+G +R  D++DG +I  + DE TG++  VV D    +A G DLRPA+
Sbjct: 1019 NWDPHTMPVITEVSGFVRFTDMIDGQTITRQTDELTGLSSLVVLDSAERTAGGKDLRPAL 1078

Query: 1071 GVLSEDGSYKRL-SNGGEARYLLSAGAILSVADGDEVKPGEVIARIPTEGAKTRDITGGL 1129
             ++   G+   +      A+Y L   AI+ + DG ++  G+ +ARIP E   T+DITGGL
Sbjct: 1079 KIVDAQGNDVLIPGTDMPAQYFLPGKAIVQLEDGVQISSGDTLARIPQESGGTKDITGGL 1138

Query: 1130 PRVAELFEARRPKDCAVIAEMDGRVEFGKDYKNKRRIKITPDVDADGNQPEAVEFLIPKG 1189
            PRVA+LFEARRPK+ A++AE+ G V FGK+ K KRR+ ITP    DG+ P   E +IPK 
Sbjct: 1139 PRVADLFEARRPKEPAILAEISGIVSFGKETKGKRRLVITP---VDGSDP--YEEMIPKW 1193

Query: 1190 KHIAVHDGDYITKGEYIIDGNPDPHDILRILGVEALANFLVDEIQEVYRLQGVPINDKHI 1249
            + + V +G+ + +G+ I DG   PHDILR+ GV A+  ++V+E+Q+VYRLQGV INDKHI
Sbjct: 1194 RQLNVFEGERVERGDVISDGPEAPHDILRLRGVHAVTRYIVNEVQDVYRLQGVKINDKHI 1253

Query: 1250 ETIVRQMLQKVEILEPGDTGLIKGDHLDKPEFDKEQEKAIARGGRPAVTQPVLLGITKAS 1309
            E IVRQML+K  I+  G +  ++G+ ++         +  A G   A     LLGITKAS
Sbjct: 1254 EVIVRQMLRKATIVNAGSSDFLEGEQVEYSRVKIANRELEANGKVGATYSRDLLGITKAS 1313

Query: 1310 LQTKSFISAASFQETTRVLTEASVHGKTDTLEGLKENVIVGRLIPAGTG-SYLRSLQRVA 1368
            L T+SFISAASFQETTRVLTEA+V GK D L GLKENVIVGRLIPAGTG +Y +   R  
Sbjct: 1314 LATESFISAASFQETTRVLTEAAVAGKRDELRGLKENVIVGRLIPAGTGYAYHQDRMRRR 1373

Query: 1369 AKRDEQLAQQ--REDAMEPL 1386
            A  +   A Q   EDA   L
Sbjct: 1374 AAGEAPAAPQVTAEDASASL 1393