Pairwise Alignments

Query, 1396 a.a., DNA-directed RNA polymerase beta from Caulobacter crescentus NA1000

Subject, 1406 a.a., DNA-directed RNA polymerase, beta' subunit, predominant form from Kangiella aquimarina DSM 16071

 Score = 1645 bits (4260), Expect = 0.0
 Identities = 857/1409 (60%), Positives = 1068/1409 (75%), Gaps = 31/1409 (2%)

Query: 3    QEVLNIFNPVQAAPTFDQIRISLASPEKIRSWSFGEIKKPETINYRTFKPERDGLFCARI 62
            +++LN       +  FD IRI LASP++IRSWSFGE+KKPETINYRTFKPERDGLFCA+I
Sbjct: 2    KDLLNFIKQQNQSEEFDAIRIGLASPDQIRSWSFGEVKKPETINYRTFKPERDGLFCAKI 61

Query: 63   FGPTKDYECLCGKYKRMKYKGIICEKCGVEVTLARVRRERMGHIELASPVAHIWFLKSLP 122
            FGP KDYECLCGKYKR+K++GIICEKCGVEVTL +VRRERMGHI+LA PVAHIWFLKSLP
Sbjct: 62   FGPVKDYECLCGKYKRLKHRGIICEKCGVEVTLTKVRRERMGHIDLACPVAHIWFLKSLP 121

Query: 123  SRIAMMLDMPLKDIERVLYFEYYIVTEPGLTPLKQHQLLSEDDYMRAQEEYGDDSFTAEI 182
            SRI M+LDM L+DIER+LYFE ++VTEPG+T L+  QLLSE+ Y+ A EE+GDD F A++
Sbjct: 122  SRIGMLLDMTLRDIERILYFEAFVVTEPGMTTLEAGQLLSEEGYLDALEEFGDD-FEAKM 180

Query: 183  GAEAIQNLLKAIDLEKEAERLREE-LSGTVSDMKQKKFSKRLKILEAFQESGNRPEWMVL 241
            GAEAI  LL  IDL++EA+R+REE +  T S+ K KK SKRLK+LEAF +SGN P+WM++
Sbjct: 181  GAEAISALLDLIDLKEEAQRIREEEIPSTNSETKLKKLSKRLKLLEAFLDSGNDPQWMIM 240

Query: 242  TVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRML 301
            TV+PV+PP+LRPLVPLDGGRFATSDLNDLYRRVINRNNRL+RL++L APDII+RNEKRML
Sbjct: 241  TVLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLRRLLDLNAPDIIVRNEKRML 300

Query: 302  QESVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVGP 361
            QESVDAL DNGRRGR ITG+NKRPLKSLADM+KGKQGRFRQNLLGKRVDYSGRSVIVVGP
Sbjct: 301  QESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGP 360

Query: 362  ELKLHECGLPKKMALELFKPFIYARLDAKGLSGTVKQSKRMVEREQPQVWDILEEVIREH 421
             LKLH+CGLPKKMALELFKPFIY++L+ +GL+ T+K +K+MVERE+P VWDILEEVIREH
Sbjct: 361  TLKLHQCGLPKKMALELFKPFIYSKLELRGLATTIKAAKKMVEREEPVVWDILEEVIREH 420

Query: 422  PVLLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQLE 481
            PVLLNRAPTLHRLGIQAFEP LIEGKAIQLHPLVC A+NADFDGDQMAVHVPL++EAQLE
Sbjct: 421  PVLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCVAYNADFDGDQMAVHVPLTIEAQLE 480

Query: 482  ARVLMMSTNNILSPANGRPIIVPSQDIVLGLYYLSVARDGEPGEGKIFADLGEIEAAMDA 541
            AR LMMSTNNILSPANG PIIVP+QD+VLGLYYL+  R    GEG IF+D  E++ A   
Sbjct: 481  ARALMMSTNNILSPANGEPIIVPTQDVVLGLYYLTRDRVNAKGEGMIFSDADEVQRAYAN 540

Query: 542  GVVSLHAKIKAR--HTEMTPEGVLLRKV--IDTTPGRMKIAALLPHHPQIGHRLIEKALT 597
            G+V LHAK+K R    ++  EG    ++   +TT GR  +  ++P    I   L+ K +T
Sbjct: 541  GIVDLHAKVKVRLPMVDIDEEGNKTARIELAETTVGRSLLWGIVP--DGISFDLVNKPMT 598

Query: 598  KKEIGNLIDIVYRHCGQKATVIFADKVMGLGFKEAAKAGISFGKDDIIIPVRKTAIVEET 657
            KK I  L++  YR CG KATVIFAD++M  GF  A ++G S G +D+ IP  K  I+E  
Sbjct: 599  KKAISKLVNTCYRECGLKATVIFADQLMYTGFGYATRSGASVGIEDMSIPEAKAEIIEAA 658

Query: 658  RKLAEEYEQQYADGLITKGEKYNKVVDAWAKATDRVADEMM----AELQMKHKDENGREK 713
             K   E ++Q+  GL+T+GE+YNKVVD W+   ++VA  MM     E  +  +    R+ 
Sbjct: 659  EKEVAEIQEQFNSGLVTQGERYNKVVDIWSHTNEKVAKAMMDFIGTEEVVDKEGNTVRQP 718

Query: 714  EINAIYMMAHSGARGSQAQMKQLGGMRGLMAKPSGEIIETPIVSNFKEGLTVQEYFNSTH 773
              N+I+MMA SGARGS AQ++QL GMRGLMAKP G IIE PI +NF+EGL V +YF STH
Sbjct: 719  SFNSIFMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIEMPITANFREGLDVSQYFISTH 778

Query: 774  GARKGLADTALKTANSGYLTRRLVDVAQDCIIVEEDCGTTKGITLRAVVEGGDVLVSLGS 833
            GARKGLADTALKTANSGYLTRRLVDVAQD +I E DCGT +G+ +  ++EGGDV+  L  
Sbjct: 779  GARKGLADTALKTANSGYLTRRLVDVAQDMVITEHDCGTEEGVYMSPLIEGGDVVEPLSE 838

Query: 834  RVLGRFTAEDVKDPGTGELVVPADTYIDENIADAIEAAVVQSVKVRSVLTCEAKIGVCGA 893
            RVLGR  AE V  PGT +++  A T +DE   + +E   V  VKVRSV+TC+ + GVC A
Sbjct: 839  RVLGRVVAEHVYVPGTDDILAEAGTLLDEKWVETLEQNSVDQVKVRSVITCQTRNGVCAA 898

Query: 894  CYGRDLARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGTA-QVAEQSFFEASNEGT 952
            CYGRDLARG  +N GEAVGVIAAQSIGEPGTQLTMRTFHIGG A + +  +  +  N+G 
Sbjct: 899  CYGRDLARGHIINQGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRASADNNVQIKNDGE 958

Query: 953  VRV-IGPTVVGSDGALVIMSRNTSVSVLVD-GKERETYKPPYGARLRVKDGDLVKRGQRL 1010
            +R+    TV   DG LVI+SR++ ++V+ + G+ERE YK PYGA L  K+G+  K G  +
Sbjct: 959  IRLKNAKTVERQDGKLVIVSRSSELNVIDEYGRERERYKVPYGAVLSAKEGEQAKGGDIV 1018

Query: 1011 GDWDPYTTPIITEVAGKIRAEDLVDGLSIREEVDEATGIAQRVVAD--WRTSARGSDLRP 1068
             +WDP+T PII E+ GKI+  D+++G++I  + DE TG++  V+ +   R+ ++ SD++P
Sbjct: 1019 ANWDPHTHPIIAELDGKIQFVDMIEGVNIERQTDELTGLSSIVITENKQRSGSKSSDVKP 1078

Query: 1069 AMGVLSEDGSYKRLSNGG---EARYLLSAGAILSVADGDEVKPGEVIARIPTEGAKTRDI 1125
            A+ ++ + G  K L   G    A Y L   AI+S+ DG EV  G+ IARIP E +KT+DI
Sbjct: 1079 AIKLIDKKG--KDLYIPGTEMPAVYFLPTNAIVSLEDGAEVNIGDAIARIPQESSKTKDI 1136

Query: 1126 TGGLPRVAELFEARRPKDCAVIAEMDGRVEFGKDYKNKRRIKITPDVDADGNQPEAVEFL 1185
            TGGLPRVA+LFEAR+PK+ A++AE+ G V FGK+ K KRR+ ITP    DG   +  E L
Sbjct: 1137 TGGLPRVADLFEARKPKEPAILAEISGTVSFGKETKGKRRLVITPQ---DGG--DTYEEL 1191

Query: 1186 IPKGKHIAVHDGDYITKGEYIIDGNPDPHDILRILGVEALANFLVDEIQEVYRLQGVPIN 1245
            IPK + + V +G+ + KGE + DG  +PHDILR+ G+  LA ++V+E+QEVYRLQGV IN
Sbjct: 1192 IPKWRQLNVFEGEKVEKGEVVSDGADNPHDILRLKGITELARYIVNEVQEVYRLQGVGIN 1251

Query: 1246 DKHIETIVRQMLQKVEILEPGDTGLIKGDHLDKPEFDKEQEKAIARGGRPAVTQPVLLGI 1305
            DKHIE I+RQML+K  + +PGD+  +KGD ++     +E +K +  G  P   + VL+GI
Sbjct: 1252 DKHIEVIIRQMLRKCIVTDPGDSLFLKGDQMEVVRVLEENDKLVEAGKDPVHFERVLMGI 1311

Query: 1306 TKASLQTKSFISAASFQETTRVLTEASVHGKTDTLEGLKENVIVGRLIPAGTGSYLRSLQ 1365
            TKASL T+SFISAASFQETTRVLTEA+V+GKTD L GLKENVIVGRLIPAGTG    + +
Sbjct: 1312 TKASLATESFISAASFQETTRVLTEAAVNGKTDDLRGLKENVIVGRLIPAGTGLTYHAER 1371

Query: 1366 RVAAKRDEQLAQQREDAMEPLPAEIALSD 1394
            R   KR E + +  +  +     E ALSD
Sbjct: 1372 R--RKRAESMVE--DLGLSADEVEQALSD 1396