Pairwise Alignments

Query, 1396 a.a., DNA-directed RNA polymerase beta from Caulobacter crescentus NA1000

Subject, 1402 a.a., DNA-directed RNA polymerase beta from Agrobacterium fabrum C58

 Score = 1965 bits (5090), Expect = 0.0
 Identities = 985/1382 (71%), Positives = 1147/1382 (82%), Gaps = 7/1382 (0%)

Query: 1    MNQEVLNIFNPVQAAPTFDQIRISLASPEKIRSWSFGEIKKPETINYRTFKPERDGLFCA 60
            MNQEV+N+FNP   A  FD IRIS+ASPEKI SWS+GEIKKPETINYRTFKPERDGLFCA
Sbjct: 1    MNQEVMNLFNPQVPAQHFDSIRISIASPEKILSWSYGEIKKPETINYRTFKPERDGLFCA 60

Query: 61   RIFGPTKDYECLCGKYKRMKYKGIICEKCGVEVTLARVRRERMGHIELASPVAHIWFLKS 120
            RIFGP KDYECLCGKYKRMKYKGIICEKCGVEVTL+RVRRERMGHIELA+PVAHIWFLKS
Sbjct: 61   RIFGPIKDYECLCGKYKRMKYKGIICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS 120

Query: 121  LPSRIAMMLDMPLKDIERVLYFEYYIVTEPGLTPLKQHQLLSEDDYMRAQEEYGDDSFTA 180
            LPSRI+ +LDM LKD+ERVLYFE YIVTEPGLT LKQ+QLLSE++YM A +E+G+D FTA
Sbjct: 121  LPSRISTLLDMTLKDVERVLYFENYIVTEPGLTSLKQNQLLSEEEYMIAVDEFGEDQFTA 180

Query: 181  EIGAEAIQNLLKAIDLEKEAERLREELSGTVSDMKQKKFSKRLKILEAFQESGNRPEWMV 240
             IGAEAI  +L +++LEK A  LR EL+ T SD+KQKKF KRLKI+E F ESGNRPEWM+
Sbjct: 181  MIGAEAIYEMLASMNLEKIAGDLRAELAETTSDLKQKKFMKRLKIVENFMESGNRPEWMI 240

Query: 241  LTVVPVIPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPDIIIRNEKRM 300
            + VVPVIPP+LRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAP IIIRNEKRM
Sbjct: 241  MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIIRNEKRM 300

Query: 301  LQESVDALFDNGRRGRVITGANKRPLKSLADMLKGKQGRFRQNLLGKRVDYSGRSVIVVG 360
            LQESVDALFDNGRRGRVITGANKRPLKSL+DMLKGKQGRFRQNLLGKRVDYSGRSVIV G
Sbjct: 301  LQESVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG 360

Query: 361  PELKLHECGLPKKMALELFKPFIYARLDAKGLSGTVKQSKRMVEREQPQVWDILEEVIRE 420
            PELKLH+CGLPKKMALELFKPFIYARLDAKG S TVKQ+K++VE+E+P+VWDIL+EVIRE
Sbjct: 361  PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKEKPEVWDILDEVIRE 420

Query: 421  HPVLLNRAPTLHRLGIQAFEPKLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSLEAQL 480
            HPVLLNRAPTLHRLGIQAFEP L+EGKAIQLHPLVC AFNADFDGDQMAVHVPLSLEAQL
Sbjct: 421  HPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL 480

Query: 481  EARVLMMSTNNILSPANGRPIIVPSQDIVLGLYYLSVARDGEPGEGKIFADLGEIEAAMD 540
            EARVLMMSTNNIL PANG PIIVPSQD+VLGLYYLS+    EPGEG  F+D+GE+  A++
Sbjct: 481  EARVLMMSTNNILHPANGHPIIVPSQDMVLGLYYLSIMNQNEPGEGMAFSDIGELHHALE 540

Query: 541  AGVVSLHAKIKARHTEMTPEGVLLRKVIDTTPGRMKIAALLPHHPQIGHRLIEKALTKKE 600
              VV+LHAKI+ R   +  +G  + K+ +TTPGRM I  LLP +  +      + +TKK 
Sbjct: 541  NKVVTLHAKIRGRFKTVDADGKPVSKIHETTPGRMLIGELLPKNVNVPFDTCNQEMTKKN 600

Query: 601  IGNLIDIVYRHCGQKATVIFADKVMGLGFKEAAKAGISFGKDDIIIPVRKTAIVEETRKL 660
            I  +ID VYRHCGQK TVIF D++M LGF  A +AGISFGKDD++IP  K  IV +T  L
Sbjct: 601  ISKMIDTVYRHCGQKDTVIFCDRIMQLGFSHACRAGISFGKDDMVIPDSKVKIVGDTEAL 660

Query: 661  AEEYEQQYADGLITKGEKYNKVVDAWAKATDRVADEMMAELQMKHKD-ENGREKEINAIY 719
             +EYEQQY DGLIT+GEKYNKVVDAW KAT++VA+EMMA ++    D E GR+K +N+IY
Sbjct: 661  VKEYEQQYNDGLITQGEKYNKVVDAWGKATEKVAEEMMARIKAVEFDPETGRQKPMNSIY 720

Query: 720  MMAHSGARGSQAQMKQLGGMRGLMAKPSGEIIETPIVSNFKEGLTVQEYFNSTHGARKGL 779
            MM+HSGARGS  QM+QLGGMRGLMAKPSGEIIETPI+SNFKEGLTV EYFNSTHGARKGL
Sbjct: 721  MMSHSGARGSPNQMRQLGGMRGLMAKPSGEIIETPIISNFKEGLTVNEYFNSTHGARKGL 780

Query: 780  ADTALKTANSGYLTRRLVDVAQDCIIVEEDCGTTKGITLRAVVEGGDVLVSLGSRVLGRF 839
            ADTALKTANSGYLTRRLVDVAQDCI+   DCGT KG+T+ A+V+ G ++ S+G+R+LGR 
Sbjct: 781  ADTALKTANSGYLTRRLVDVAQDCIVNSVDCGTDKGLTMTAIVDAGQIVASIGARILGRT 840

Query: 840  TAEDVKDPGTGELVVPADTYIDENIADAIEAAVVQSVKVRSVLTCEAKIGVCGACYGRDL 899
              +D+ +P TGE +V A T IDE     IE A +QSV++RS LTCE +IGVCG CYGRDL
Sbjct: 841  ALDDIDNPVTGENIVKAGTLIDEADVAIIEKAGIQSVRIRSALTCEVQIGVCGVCYGRDL 900

Query: 900  ARGTPVNIGEAVGVIAAQSIGEPGTQLTMRTFHIGGTAQVAEQSFFEASNEGTVRVIGPT 959
            ARGTPVN+GEAVGVIAAQSIGEPGTQLTMRTFH+GGTA V +QSF EAS EGT+++    
Sbjct: 901  ARGTPVNMGEAVGVIAAQSIGEPGTQLTMRTFHLGGTANVVDQSFLEASYEGTIQIKNRN 960

Query: 960  VV-GSDGALVIMSRNTSVSVLVD-GKERETYKPPYGARLRVKDGDLVKRGQRLGDWDPYT 1017
            ++  S+G L+ M RN SV++L + G ER + +  YG+++ V DGD VKRGQRL +WDPYT
Sbjct: 961  ILRNSEGVLIAMGRNMSVTILDERGVERSSQRVAYGSKIFVDDGDKVKRGQRLAEWDPYT 1020

Query: 1018 TPIITEVAGKIRAEDLVDGLSIREEVDEATGIAQRVVADWRTSARGSDLRPAMGVLSEDG 1077
             P++TEV G +  EDLVDGLS+ E  DE+TGI +R V DWR++ RGSDL+PA+ +    G
Sbjct: 1021 RPMMTEVEGTVHFEDLVDGLSVLEATDESTGITKRQVIDWRSTPRGSDLKPAIIIKDASG 1080

Query: 1078 SYKRLSNGGEARYLLSAGAILSVADGDEVKPGEVIARIPTEGAKTRDITGGLPRVAELFE 1137
            +  +LS GGEAR+ LS  AILSV  G +V  G+V+AR P E AKT+DITGGLPRVAELFE
Sbjct: 1081 AVAKLSRGGEARFHLSVDAILSVEPGSKVSQGDVLARSPLESAKTKDITGGLPRVAELFE 1140

Query: 1138 ARRPKDCAVIAEMDGRVEFGKDYKNKRRIKITPDVDADGNQPEAVEFLIPKGKHIAVHDG 1197
            ARRPKD A+IAE+DG +  G+DYKNKRR+ I P  D      E VE+LIPKGK   + +G
Sbjct: 1141 ARRPKDHAIIAEIDGTIRLGRDYKNKRRVMIEPAEDG----VEPVEYLIPKGKPFHLQEG 1196

Query: 1198 DYITKGEYIIDGNPDPHDILRILGVEALANFLVDEIQEVYRLQGVPINDKHIETIVRQML 1257
            DYI KGEYI+DGNP PHDIL I GVEALA++LV+EIQEVYRLQGV INDKHIE IVRQML
Sbjct: 1197 DYIEKGEYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVVINDKHIEVIVRQML 1256

Query: 1258 QKVEILEPGDTGLIKGDHLDKPEFDKEQEKAIARGGRPAVTQPVLLGITKASLQTKSFIS 1317
            QKVEI + GD+  I GD++D+ E +   ++ I  G +PA  +PVLLGITKASLQT SFIS
Sbjct: 1257 QKVEITDAGDSQYIVGDNVDRIEMEDMNDRLIEEGKKPAYGEPVLLGITKASLQTPSFIS 1316

Query: 1318 AASFQETTRVLTEASVHGKTDTLEGLKENVIVGRLIPAGTGSYLRSLQRVAAKRDEQLAQ 1377
            AASFQETT+VLTEA++ GKTDTL+GLKENVIVGRLIPAGTG  +  ++R+A  RD+ + +
Sbjct: 1317 AASFQETTKVLTEAAIAGKTDTLQGLKENVIVGRLIPAGTGGTMTQIRRIATSRDDLILE 1376

Query: 1378 QR 1379
            +R
Sbjct: 1377 ER 1378