Pairwise Alignments

Query, 889 a.a., N-acetyl-glucosamine/N-acetyl-chitin oligosaccharide outer membrane transporter nagA from Caulobacter crescentus NA1000

Subject, 1013 a.a., TonB-dependent receptor from Caulobacter crescentus NA1000 Δfur

 Score =  228 bits (581), Expect = 1e-63
 Identities = 245/996 (24%), Positives = 393/996 (39%), Gaps = 172/996 (17%)

Query: 9   LAASASAMVVMIAAPAMAQSG----GNEVEQVVITGIRASLLQSIESKRKADAIVDVVTA 64
           ++  A A+ +  A  A AQ+      +E+E VV+TG RASL  +++ KR+ + +VDV+ A
Sbjct: 16  VSGGALALAMAFAGAASAQTAPAPASDEIEAVVVTGFRASLANALDVKRRENDLVDVIKA 75

Query: 65  EDVGKFPSTNVAEALTIVPGVTVDRAFGQGEKVSILGTDPALNRTLLNG----QTVASAD 120
           +D+  FP  N+AE+L  VPGV++DR  G+G  +++ G  P      LNG     T    D
Sbjct: 76  QDIADFPDLNLAESLQRVPGVSIDRDGGEGRTITVRGLGPDFTVVRLNGLEALATTGGKD 135

Query: 121 WFILDSPGRTFNYALLAPQIVGKVDVYKSPEARIDEGSIGGTVIVNTRKPLDLKSGTIAG 180
                + GR F++++ A ++   V V KS  A  +EGS+G  V +   +P D    T++ 
Sbjct: 136 GSGGANRGRQFDFSIFASELFNSVTVRKSTSAMNEEGSLGAIVDLQAGRPFDFSKFTMSA 195

Query: 181 AVSYLYTDRSKKGDLQGSLLAS--WKNADSTFGASFSIQRAEDQLRRDGVET-------- 230
           +    Y D S+K D + + L S  W       GA  S+  A    R +G  T        
Sbjct: 196 SAKVGYNDLSRKNDPRYTFLVSNRWDTGIGEIGALLSVAYATRAQREEGSSTGRWENPSV 255

Query: 231 --------------YGTIAANQWAGG-NPDNPVDSRTKGCV-GSCASTLTANLGARS--- 271
                         Y  + A    GG          T G V G  A T+TA  G  +   
Sbjct: 256 RFNSATAFPCFGAAYNPVTAGAATGGATAATSAACSTIGTVTGGTAPTVTAAAGTANNLW 315

Query: 272 -PNAFGASYFEQGRTRTTYTTALQYKPNDQ--LSLEFNWLKIDADYDNTNQSMYAF--QG 326
            P        +  + R   T +LQ++P D+  L+L+    K   + D T   + +F   G
Sbjct: 316 HPRIPRYGRLDYDQERLGVTGSLQWRPTDRSTLTLDMMLAKFQNNRDETYLEIISFARSG 375

Query: 327 NTWNSLGALTGLTVNNGVVSKASFNNALSVLDVQHREAGLKSDTFHLKGGYK-GDGWDLN 385
                   +     + G + K +F++     + +H     + + F L    + G+G +L 
Sbjct: 376 AGLPQTDVVNFTADSKGTLIKGTFDDVDVRTEYRHDTLKTEFNQFALTYDTRFGEGGNLK 435

Query: 386 GEVGKSTADGGTKRQVFLEFLNWAS--YTVDISGAPK-----------SPGSLTY-TTNV 431
              G+S +      Q    F  + S  Y+ D S   K           +P +  Y ++N 
Sbjct: 436 VGYGQSRSIQDNPDQTTFSFERYDSDNYSYDYSANDKLPSFNYGFDATNPANYVYSSSNT 495

Query: 432 LGNPSAFATDPGWSGNLVSKPTSDEE-------------KYAQFDFGKDFDGVIQRVQVG 478
           LG+ S     P  + N      +D +             KY ++ F      +  RV  G
Sbjct: 496 LGDASLLRMRPSKAVNTFKTIFADVDYQILDGFKLRYGAKYKEYGFTSWEKRLNSRVLAG 555

Query: 479 YKRREHQTGQQYA---GIAITGVAAPASSFN-----PSTVPSNYLK----------GFDG 520
                  +   +    G+ +  V+   S F      P+ VP+++L           G+D 
Sbjct: 556 NPATTFTSEAAFGLPPGVTVADVSRVISGFGRGLDIPAGVPTSWLAPDLDKLRQKLGYDC 615

Query: 521 VGTQMQNRFRIDGNAMVSYVESGKWLAAGATMPKPSIFAAAEFTAGNWNIQEDIDALYAQ 580
                   FR+     +  + +                           I E   A Y Q
Sbjct: 616 NCVNANGDFRLSVQNQLGAMRA---------------------------ITEKDTAFYIQ 648

Query: 581 ANFKAD----NVRGNFGVRYVKTSVDSAG---------YVCKPGAACNKAADWSWKST-K 626
            +F  D     VRGNFGVRYVKT  ++ G          V   G   ++    +   T K
Sbjct: 649 GDFDYDIFNIPVRGNFGVRYVKTEQEATGNYSTGFTTQTVTTLGGTFSQRVPIAMSQTVK 708

Query: 627 KSYDNVLPSVNIIVDAREDLVLRFAAAQVIARPNYSDMT-NYFWLSDGILTGGGGNPALE 685
           + Y N LPS+NI     +   +RFAAA+V+ RP   +++  +  +S    T   GNP L 
Sbjct: 709 RQYTNTLPSLNISAQPFDSFFVRFAAAKVMTRPQLPNLSPGFSAMSQQAQTLTRGNPELN 768

Query: 686 PYKSSNFNASAEWYFQPQAILSAEVFYKDISNYI---------LQRTQPESYFNQSQGKV 736
           P  ++N + S EWY   + + S   F KDI +YI              P++         
Sbjct: 769 PMLANNMDLSFEWYPDKETLFSVGFFQKDIKSYIQTSSVAVPWADTELPDNLLANGNTAD 828

Query: 737 TTYQISRPFNAGSAEVKGLAMAYQQTFG------GGFGLLANYT--------------YA 776
           T + ++   N    ++KG  ++ Q+ F        GFG + NYT              YA
Sbjct: 829 TLFTVTTQINTPGGKLKGFEVSLQRPFTFLPAPFDGFGGIVNYTHVQSDIQYVIANPVYA 888

Query: 777 DASGQSGAPLPYSSKNQVNLSP-------FYENGPFSARATFTWRSKYF-----TGVDRG 824
                   P    ++  VNLSP       +YE   F AR + ++R  Y      +  +  
Sbjct: 889 GTPRALVTPAVMLTQPLVNLSPDAYNATLYYEKNDFKARISASYRDPYLIQVAPSATNNN 948

Query: 825 DDMFVKAAKTLDATVGYAVTKNITMSLSGQNLLDSE 860
           D    +    +D+ V Y   KN T++L   NL D +
Sbjct: 949 DVRIKEKTLNIDSQVSYNF-KNFTVTLEMINLTDEK 983