Pairwise Alignments

Query, 889 a.a., N-acetyl-glucosamine/N-acetyl-chitin oligosaccharide outer membrane transporter nagA from Caulobacter crescentus NA1000

Subject, 950 a.a., TonB-dependent receptor from Caulobacter crescentus NA1000

 Score =  223 bits (569), Expect = 3e-62
 Identities = 249/907 (27%), Positives = 384/907 (42%), Gaps = 110/907 (12%)

Query: 8   VLAASASAMVVMIAAPAMAQSGGN-EVEQVVITGIRASLLQSIESKRKADAIVDVVTAED 66
           V+AA A       A  A A +  N EV+ VV+TG R SL  + E+K+ +  + DV+ AED
Sbjct: 59  VMAALAPVAQAHAADQAQAAAADNAEVDAVVVTGFRKSLGVAREAKKTSAIVTDVIVAED 118

Query: 67  VGKFPSTNVAEALTIVPGVTVDRAFGQGEKVSILGTDPALNRTLLNGQTVASADWFILDS 126
           + KFP  N+AE+L  +PGV ++R  G+G +VS+ G  P   R  LNG  V       +DS
Sbjct: 119 MAKFPDLNLAESLQRLPGVAINREGGEGRRVSLRGLGPDFTRVQLNGMEVLGNVDSPMDS 178

Query: 127 PGRT-----FNYALLAPQIVGKVDVYKSPEARIDEGSIGGTVIVNTRKPLDLKSGTIAGA 181
            G+T     F++ + A ++  KVDV KS  A  DEG + GTV + T KP D  +GT  GA
Sbjct: 179 RGQTSRDRAFDFNIFASELFSKVDVRKSFSAEQDEGGMAGTVGLYTAKPFDY-AGT-KGA 236

Query: 182 VSYLYTDRSKKGDLQ--GSLLASWKNADSTFGASFSIQRAEDQLRRDGVETYGTIAANQW 239
           +S      S   D Q  G+ + + KN D  FG   S+  ++ +    G  TYG       
Sbjct: 237 LSLQAGTNSATKDTQPRGAAMIA-KNWDDKFGLLASVAYSKRKTEEQGYNTYGAGTQRAL 295

Query: 240 AGGNPD-NPVDSRTKGCVGSCASTLTANLGARSPNAFGASYFEQGRTRTTYTTALQYKPN 298
           A    + NPVD+         A  +   L  +  N    S +   + R   T A Q++P 
Sbjct: 296 AANVVNLNPVDA---------AKAMNGELIFQRGNRL--SVWGSDQERLGVTAAAQWRPV 344

Query: 299 DQLSLEFNWL--KIDADYDNTNQSMYAFQGNTWNSLGALTGLTVN--------------- 341
           + ++L  + L  K   D    + +  A  G+T   LG  T  + N               
Sbjct: 345 ETVTLTLDALHGKFTNDRTEIHLATRATLGST--ILGGPTPHSGNLVSAPPVLRAIQYDK 402

Query: 342 NGVVSKASFNNALSVLDVQHREAGLKSDTFHLKGGYK-GDGWDLNGEVGKSTADGGTKRQ 400
           +  +  A  +N +   + + +EA    D   L G ++  D   ++G +G+ T+D      
Sbjct: 403 HNSIIYADVDNTVFATETRRQEAKNTFDQLVLTGEWQVSDKLRVDGHIGQETSDYDIPIS 462

Query: 401 VFLEFLNWASYTVDISGAPKSPGSLTYTTNVLGNPSAFATDPGWSGNLVSKPTSDEEKYA 460
                  +     D  G     G  TY  N     +  A +  +S    +    + E  A
Sbjct: 463 DKFYTEAFGGLITDYRG---DSGKNTYKWNTTDANNYRAHEIDFSATYQTTELKNAEFNA 519

Query: 461 QFDFGKDFDGVIQRVQVGYKRREHQTGQQYAGIAITGVAAPASSFNPSTVPSNYLKGFDG 520
            +DF    DG+  +  + Y+      G +  G + T      +++   T+  N L G   
Sbjct: 520 AYDFS---DGLTLKGGLSYR------GFKNEGYSQTNDDVNRTAWERGTL-DNRLDGVTK 569

Query: 521 VGTQMQNRFRIDGNAMVSYVESGKWLAAGATMPKPSIFAAAEFTAGNWNIQEDIDALYAQ 580
           V TQ  ++  I  +   +  + G     GA     SI+A          ++ED  A Y Q
Sbjct: 570 VFTQHDDQSWIIVDWDKALAKYGVTRTLGAPR---SIYA----------VEEDTTAGYLQ 616

Query: 581 ANFKAD----NVRGNFGVRYVKTSVDSAGYVCKPGAACNKAADWSWKSTKKSYDNVLPSV 636
            ++K       VRGN G+R   T + S+G +   G      A       KK+Y  VLPS+
Sbjct: 617 LDWKTQLMGLPVRGNTGLRAYDTELTSSGVLAVRGVNTPTVA-------KKTYSGVLPSL 669

Query: 637 NIIVDAREDLVLRFAAAQVIARPNYS--DMTNYFWLSDGILTGGGGNPALEPYKSSNFNA 694
           N +V+  +   +R AAAQ I RP      M     +    +T   GNP LEPY S  F+ 
Sbjct: 670 NAVVEVSDRFQIRVAAAQNINRPALGAYAMNGSVSVDGTTVTVSTGNPNLEPYTSDEFDL 729

Query: 695 SAEWYFQPQAILSAEVFYKDISNYILQRTQ----------PESYFNQSQGKVTTYQISRP 744
            AEWYF    +L+A +F+K+I   I  +T            E  +            +R 
Sbjct: 730 VAEWYFGGVGMLTAGLFHKNIDGLIASQTTTNVSYASTGLAEGLYPGVTATTNVASYTRQ 789

Query: 745 FNAGSAEVKGLAMAYQQTFG------GGFGLLANYTYADA---SGQSGAPLPYS----SK 791
            N  +A++ GL ++ Q  F          G +AN T  D+   +  +G P        S 
Sbjct: 790 VNLRNAKLTGLELSAQSDFFFLPGVLKNMGAVANLTLIDSKTINTVNGKPQETDIFGLSD 849

Query: 792 NQVNLSPFYENGPFSARATFTWRSKYFTGVDRGDDMFVKAAKTLDATVGYAVTKNITMSL 851
              N + +YE   +  R +  +RS Y   +D G      A   +DA+  Y +T  + +SL
Sbjct: 850 VNANATLYYETAKYGGRVSANYRSDYL--IDSG---AFNATTYVDASAFYQLTPRVRLSL 904

Query: 852 SGQNLLD 858
              NL D
Sbjct: 905 DAINLTD 911