Pairwise Alignments

Query, 889 a.a., N-acetyl-glucosamine/N-acetyl-chitin oligosaccharide outer membrane transporter nagA from Caulobacter crescentus NA1000

Subject, 966 a.a., TonB-dependent receptor from Caulobacter crescentus NA1000

 Score =  305 bits (781), Expect = 9e-87
 Identities = 269/908 (29%), Positives = 411/908 (45%), Gaps = 120/908 (13%)

Query: 5   RKSVLAASASAMVVMIAAPAMAQSGGNEVEQVVITGIRA-SLLQSIESKRKADAIVDVVT 63
           R S   A  +A    +A  A        +E +V+TG  A SL +++  KRKA  +VD ++
Sbjct: 107 RVSTAPAPVAAQAAPVAPTAAQAEEPAMLEALVVTGGFANSLARALADKRKAANVVDAIS 166

Query: 64  AEDVGKFPSTNVAEALTIVPGVTVDRAFGQGEKVSILGTDPALNRTLLNGQTVASADWFI 123
           AED+GKFPS N+AEAL  VPGV + R  G+G  V + G  P      LNG++ A+ +  +
Sbjct: 167 AEDIGKFPSNNIAEALQRVPGVAITRDRGEGLFVRVRGLGPNFQIVTLNGRS-AAVNENM 225

Query: 124 LDS--PGRTFNYALLAPQIVGKVDVYKSPEARIDEGSIGGTVIVNTRKPLDLKSGTIAGA 181
            DS   GR F +  L  ++V  V+V KSP A +DEG++GG V V T +PLDL   T+A +
Sbjct: 226 RDSGQSGRQFRFDTLPSELVAGVEVGKSPLASLDEGALGGVVDVKTFRPLDLGRSTLALS 285

Query: 182 VSYLYTDRSKKGDLQGSLLASWKNADSTFGASFSIQRAEDQLRRDGVETYGTIAANQWAG 241
            +      + K D + S LASW NA+ TFG   ++   +  LR+D +   G      W+ 
Sbjct: 286 ATASRPQLAGKTDPRLSGLASWTNAEGTFGVLAALVFDQRTLRQDRITGVG------WSY 339

Query: 242 GNPDNPVDSRTKGCVGSCASTLTANLGARSPNAFGASYFEQGRTRTTYTTALQYKPND-- 299
            +P             +   T+ A   +  P A   +   + R R     + QY+P+D  
Sbjct: 340 ADP-----------ASTLGKTMIAQGISLYPTAIRPTLEREDRERKGVVLSAQYRPSDET 388

Query: 300 QLSLEFNWLKIDADYDNTNQSMYAFQGNTWNSLGALTGLTVNNGVVSKASFNNALSVLDV 359
           +++++ ++ K+D  YD   +  Y+   N   +  A     + +GV+   + N   S   +
Sbjct: 389 EITVDASYTKLDDHYD---ELTYSVDQNV--ATLAAGSAVIKDGVLVGGTVN---STTQI 440

Query: 360 QHREAGLKSDTFHLKG--GYKGDGWDLNGEVGKSTADGGTKRQVFLEFL-------NWAS 410
               + L  D   + G    K + W L  ++  + A   T   +    L        ++ 
Sbjct: 441 GREVSDLAHDNLMVAGRIRQKLEDWTLTADLAYARAFSETSNPITRTRLLGPIGQTTFSM 500

Query: 411 YTVDISGAPKSPGSLTYTTNVLGNPSAFA-TDPGWSGNLVSKPTSDEEKYAQFDFGKDFD 469
             VD    P    S+   T  LGNPS        W  N      +D+E   QFD  +   
Sbjct: 501 TKVDDDAVP----SVRLATADLGNPSLLPFRRIEWREN----NATDDETALQFDAERPLS 552

Query: 470 -GVIQRVQVGYKRREHQTGQQYAGIAIT----GVAAPASSFNPSTVPSNYLKGFDGVGTQ 524
            G++ RVQ G K RE       A I  T    G    A  F+   V S++L   DG    
Sbjct: 553 WGLLSRVQFGVKYRERSRDYNRADINYTTNLAGKFFGAEYFDAFPV-SSFLGKVDGT--- 608

Query: 525 MQNRFRIDGNAMVSYVESGKWLAAGATMPKPSIF----------AAAEFTAGNWNIQEDI 574
                                L     MP P+ F           A      ++ + EDI
Sbjct: 609 ---------------------LPTNWAMPDPAAFWGLADKTQRGTARADKRNSYQVSEDI 647

Query: 575 DALYAQANFKAD----NVRGNFGVRYVKTSVDSAGYVCKPGAACNKAADWSWKSTKKSYD 630
            A Y   + ++      +RG  GVR  +T   SAG+     AA            K++Y 
Sbjct: 648 AAGYILGDVESKVFNAPLRGQLGVRVARTEQISAGHADNGSAAIP-------VRYKETYT 700

Query: 631 NVLPSVNIIVDAREDLVLRFAAAQVIARPNYSDMTNYFWL--SDGILTGGGGNPALEPYK 688
           +VLP+ N  ++  + L  RFAAA+VI RP+ +D+     L  S  +LT  GGNP L+P++
Sbjct: 701 DVLPTANFALELTDTLQARFAAAKVITRPSLADLAPRLTLNSSGTVLTAVGGNPLLKPFE 760

Query: 689 SSNFNASAEWYFQPQAILSAEVFYKDISNYILQRTQPESYFNQSQGKVTTYQISRPFNAG 748
           +  ++A+ EWYF P + L A  FYKDI+ ++   +Q  +     Q    TY ++ P N G
Sbjct: 761 AWQYDATLEWYFAPGSALIAGAFYKDITTFVY--SQKTNIVVDGQ----TYLLTSPTNGG 814

Query: 749 SAEVKGLAMAYQQTFG------GGFGLLANYTYADASGQSGAPLPYS----SKNQVNLSP 798
           SA++KG+ +AYQ  F        G G LANYTY D        L       +KN  NL+ 
Sbjct: 815 SAKIKGIELAYQHLFKRLPAPFDGLGFLANYTYTDTEATYSPTLKDEMVNVAKNSFNLTA 874

Query: 799 FYENGPFSARATFTWRSKYFTGVDRG--DDMFVKAAKTLDATVGYAVTKNITMSLSGQNL 856
           FYE   F+ARA+++W       V       +   A  +LDA+V Y +T +IT ++  QNL
Sbjct: 875 FYEKDRFAARASYSWVDDVLQDVGGAGLSALNDSAFGSLDASVSYKITPSITAAVEAQNL 934

Query: 857 LDSEYYAY 864
            ++  + +
Sbjct: 935 TNASQWQF 942