Pairwise Alignments

Query, 889 a.a., N-acetyl-glucosamine/N-acetyl-chitin oligosaccharide outer membrane transporter nagA from Caulobacter crescentus NA1000

Subject, 938 a.a., TonB-dependent receptor from Alteromonas macleodii MIT1002

 Score =  172 bits (437), Expect = 7e-47
 Identities = 234/956 (24%), Positives = 398/956 (41%), Gaps = 144/956 (15%)

Query: 1   MKTIRKSVL-AASASAMVVMIAAPAMAQSGGNE------VEQVVITGIRASLLQSIESKR 53
           MK  + +++ AA  S  +   +APA AQ    +      +E + ++GIR SL ++   K 
Sbjct: 1   MKQFKPNLIKAALISGGMAFGSAPAFAQDANTDAVDEANLEVIQVSGIRGSLQRAQAIKM 60

Query: 54  KADAIVDVVTAEDVGKFPSTNVAEALTIVPGVTVDRAFGQGEKVSILGTDPALNRTLLNG 113
              +IV+ ++AED+GK P T++AE++  +PGVT +R  G+   +S+ G +     T LNG
Sbjct: 61  DNTSIVEALSAEDIGKLPDTSIAESIARLPGVTGERRNGRTSGISVRGFNENYVGTSLNG 120

Query: 114 QTVASADWFILDSPGRTFNYALLAPQIVGKVDVYKSPEARIDEGSIGGTVIVNTRKPLDL 173
           + +        D+ G  F+  L   +I+  + VYK+PEA +   +IGG++ + T KPL  
Sbjct: 121 RELLGMG----DNRGVEFD--LYPTEIISNILVYKTPEAGMTTQNIGGSIDLQTVKPLTA 174

Query: 174 KSGTIAGAVSYLYTDRSKKGDLQG-----SLLASWKNADSTFGASFSIQRAEDQLRRDGV 228
           +S            + S   D        S+    + AD T G + ++   E   +    
Sbjct: 175 ESTFTVNGTFEKNAEDSPNPDFDNDGHRISVNFVDQFADDTIGLALTVASMESPRQEQYF 234

Query: 229 ETYGTIAANQWAGGNPDNPVDSRTKGCVGSCASTLTANLGARSPNAFGASYFEQGRTRTT 288
             +G            D   DS  +          T  LG    ++F  S   +   R +
Sbjct: 235 RGWGYA----------DVGFDSELRDLDSVEVPAGTVVLGGH--DSFQRSAMLE---RDS 279

Query: 289 YTTALQYKPNDQLSLEFNWLKIDADYDNTNQSMYAFQGNTWN-SLGALTGLTVNNGVVSK 347
               +++ P D+L+++ + L ID   ++  + +    G  W  +   +TG  V NG+V+ 
Sbjct: 280 IAAVVEWAPTDKLNIQLDALYIDFVENDVRRGVEE-GGPEWGPNPYVITG--VENGLVTS 336

Query: 348 ASFNNALSVLDVQHREAGLKSDTFHLKGGYK-GDGWDLNGE------------------V 388
              N   SV+    R+      T  +   Y+  D W    +                  V
Sbjct: 337 GYTNGFYSVVRNDARQQDADLTTVGVNVEYQINDSWTAELDYSTGKVEKEIIEVESYSGV 396

Query: 389 GKSTADGGTKRQVFLEFLNWASYTVDISGAPK-SPGSLTYTTNV-LGNPSAFATDP---- 442
           G++  DG   R +        S  V  S  P  +P  LT  T + L  P A+   P    
Sbjct: 397 GRAGIDG---RPLTARSWEMTSSGVLFSDHPTIAPVDLTDPTLISLAGPQAWGAPPLLES 453

Query: 443 -GWSGNLVSKPTSDEE-KYAQFDFGKDFD-GVIQRVQVGYKRREHQTGQQYAGIAITGVA 499
            G  G  V++P  +EE    +FD     D GV+  +  G    +    +   G  +T  +
Sbjct: 454 DGQDG-FVNQPFFEEELDTLRFDVKGYVDWGVVTGLSAGVVYSDRSKSKDNNGAYLTAPS 512

Query: 500 APASSFNPSTVPSNYLK--GFDGVGTQMQNRFRIDGNAMVSYVESGKWLAAGATMPKPSI 557
            P  +  P  +    L   G DGV          D    +  VESG ++ + A+  +   
Sbjct: 513 YPDDAAIPDVLGVTNLDFIGIDGV-------LAYDS---LGLVESGYYIESDASRVQN-- 560

Query: 558 FAAAEFTAGNWNIQEDIDALYAQANFKADN----VRGNFGVRYVKTSVDSAGYVCKPGAA 613
               +     + + E++  LY + + + +     VRGN G++ V    +S G+       
Sbjct: 561 ----DRLGDTYTVDEELLTLYTKLDLEMEFGDIWVRGNVGLQVVSADQESTGFSATSDRE 616

Query: 614 CNKAADWSWKSTKKSYDNVLPSVNIIVDAREDLVLRFAAAQVIARPNYSDMTNY----FW 669
               A  S  +    Y +VLP++N+  +  E   +R   ++VI+RP   DM       F 
Sbjct: 617 GYTIA--SPVTGGADYTDVLPTLNLSAEVAEGQFVRLGLSKVISRPRMDDMRPNTQVTFA 674

Query: 670 LSDGILT----------GGGGNPALEPYKSSNFNASAEWYFQPQAILSAEVFYKDISNY- 718
            +DG +           G  GNP L P +++ F+ + E YF     ++   FYKDI N+ 
Sbjct: 675 FNDGQIISDNIQNGPWGGSSGNPELRPLEANQFDLAYENYFADTGYVAVSFFYKDIKNWH 734

Query: 719 -----ILQRTQ---PESYFNQSQGK---VTTYQISRPFNAGSAEVKGLAMAYQQTFG--- 764
                +   T+   PE +   S+G+   + T Q+S   +     V+G  +     F    
Sbjct: 735 RSTSIVADFTEFYIPELH-QGSEGQTPVLFTGQVSSVLDGFEGFVRGYELQGSLPFDMIH 793

Query: 765 ---GGFGLLANYTYAD-----ASGQSGAPLPYSSKNQVNLSPFYENGPFSARATFTWRSK 816
               GFGL A+ T+ D     A GQ+   +P  S+   +++ FYEN  F  R   T R +
Sbjct: 794 DSLEGFGLFASATFMDGEVDAAPGQTETRIPGLSEESYSMTFFYENAGFEFRLAATKRDQ 853

Query: 817 YFTGVDRGDDM-FVKAAK----TLDATVGYAVTKN-------ITMSLSGQNLLDSE 860
           + T  +RG  +  V A K     +DA +GY  +++       + ++L  QNL D +
Sbjct: 854 FLT-EERGTSLALVDATKQGGTLVDAQIGYDFSESGIEYLEGLRVTLQAQNLTDED 908