Pairwise Alignments

Query, 300 a.a., RarD family membrane permease from Caulobacter crescentus NA1000

Subject, 298 a.a., Uncharacterized inner membrane protein RarD from Pseudomonas sp. S08-1

 Score =  210 bits (534), Expect = 4e-59
 Identities = 127/292 (43%), Positives = 170/292 (58%), Gaps = 10/292 (3%)

Query: 5   SQTESRSAYAAGVGCYLLWGFLPLYFHLLAKLGVTSWEMIAHRSLWSVLWALGLVLIARQ 64
           S       YA G+  YL+WG  PLYF  +    V + E+IAHR++WS L+   L+ + + 
Sbjct: 2   SSANPSRGYALGIAAYLIWGLFPLYFKAIQ--AVPALEIIAHRAIWSALFGALLLALWKH 59

Query: 65  VGQVAQVLRQPKTLGVLALTTLAIFSNWTIYVFAVNAGHVIEASLGYYINPLMNMAAGAL 124
            G   ++   P+ L VLA + L I SNW +YV+AVN G ++EASLGYYINPL+N+  G L
Sbjct: 60  PGWWRELRDNPRRLAVLAGSGLLIASNWLVYVWAVNNGRMLEASLGYYINPLINVLLGML 119

Query: 125 LFRERMSTEGKVAIGLAAVGVAIQTVALGHLPIVSLGLALTFCVYAILRKQVKADAQTGL 184
           L  ER+     VA+GLAA+GV  Q   +G +P VSL LALTF  Y ++RKQ    A  GL
Sbjct: 120 LLGERLRRLQWVAVGLAALGVLQQVWQVGSIPWVSLVLALTFGFYGLIRKQAPVAALPGL 179

Query: 185 FIECAYLALPGLAYVWFL----QSSGQGHFGDGASVTTLLALAGPATVVPLALFAWSARR 240
            +E  +L LP LA  W L      S Q  F   +    L+A AGP T+VPL  F  +AR 
Sbjct: 180 VVE-TWLLLP-LALGWLLLHPAAISTQPAFWSSSEALWLIA-AGPITLVPLLCFNAAARH 236

Query: 241 LPLSAVGFLQFIAPTIQFLLGV-AFGEPFTPLRALSFVFIWLGVATFAYGAW 291
           LP + +GFLQ++APT+  L  V  FGE   P + LSFV IW  +  ++   W
Sbjct: 237 LPYTTLGFLQYLAPTLVLLQAVLLFGETLEPSKLLSFVCIWAALFIYSLDIW 288