Pairwise Alignments

Query, 300 a.a., RarD family membrane permease from Caulobacter crescentus NA1000

Subject, 304 a.a., putative chloramphenical resistance permease RarD from Alteromonas macleodii MIT1002

 Score =  210 bits (534), Expect = 4e-59
 Identities = 117/303 (38%), Positives = 176/303 (58%), Gaps = 15/303 (4%)

Query: 9   SRSAYAAGVG------CYLLWGFLPLYFHLLAKLGVTSWEMIAHRSLWSVLWALGLVLIA 62
           S+ A AA VG       Y +WG  P+YF  L  L     E++ HR +WSV+  +GL+   
Sbjct: 2   SKQASAAQVGVICAIAAYSMWGVAPVYFKQLMVLPAA--EILMHRVIWSVVLLVGLIAAL 59

Query: 63  RQVGQVAQVLRQPKTLGVLALTTLAIFSNWTIYVFAVNAGHVIEASLGYYINPLMNMAAG 122
           +Q  +V   LR  + + +L +  L + +NW ++++A+N  H+++ASLGYYINPL+N+  G
Sbjct: 60  KQWPKVGAALRNKRVMQILFVAGLLLGANWLLFIWAINNDHILDASLGYYINPLINVFLG 119

Query: 123 ALLFRERMSTEGKVAIGLAAVGVAIQTVALGHLPIVSLGLALTFCVYAILRKQVKADAQT 182
            L   ER+    +VA+GLA +GVAI   + GH+P ++L LA +F VY +LRKQV  D+  
Sbjct: 120 RLFLGERLRNLQRVAVGLAVIGVAILIFSYGHVPWIALVLAGSFSVYGLLRKQVAVDSLP 179

Query: 183 GLFIECAYLALPGLAYVWFLQSSGQGHFGDGASVTTLLALAGPATVVPLALFAWSARRLP 242
           GLFIE   L+   + Y  F  S     F + A++ TL+  AG  T  PL  F  +ARR+ 
Sbjct: 180 GLFIETLMLSPFAIIYWVFFGSEYSNLFNNDATLNTLILAAGIVTTAPLLCFTAAARRIM 239

Query: 243 LSAVGFLQFIAPTIQFLLGV-AFGEPFTPLRALSFVFIWLGVATFA------YGAWRKAK 295
            S +GF Q+I PT+ F+L V  +GEP    R ++F F+W  +  F+      Y + RKA+
Sbjct: 240 YSTLGFFQYIGPTLMFILAVYLYGEPLEESRLVTFGFVWFALILFSADSLVNYRSQRKAR 299

Query: 296 ALS 298
            L+
Sbjct: 300 KLA 302