Pairwise Alignments

Query, 403 a.a., type II secretion pathway protein F from Caulobacter crescentus NA1000

Subject, 405 a.a., type II secretion system inner membrane protein GspF from Paraburkholderia sabiae LMG 24235

 Score =  282 bits (722), Expect = 1e-80
 Identities = 151/403 (37%), Positives = 250/403 (62%), Gaps = 3/403 (0%)

Query: 1   MATFDYVALDLSGRTRRGQLKAVDEAAAADQLQRKRLAPVKI--MASVAKPARVGRFALG 58
           M  F + A+D +G+ ++G L A     A  QL+ + L P+ +   A+  +  R  R +LG
Sbjct: 1   MPAFRFEAIDAAGKAQKGVLDADSARGARTQLRTQGLTPLVVEPAATRTRGERSQRLSLG 60

Query: 59  QGLSAKDRSMFTRQLATLTSVST-LEEALRTIALQADKPKLKQVIGEVHAAVLEGYRLSD 117
           + LS +++++ TRQLA+L      L+EAL  +  Q+++  +++++  + A VL G+ L++
Sbjct: 61  RKLSQREQAILTRQLASLLIAGLPLDEALSVLTEQSERDYIRELMAAIRAEVLGGHSLAN 120

Query: 118 AMGRPAKAFPPLYRAMVAAGESSGALPAILDRLADLLEQQQQVRAKITTALVYPIVLAVV 177
           A+ +  K FP +YRA+VAAGE +G L  +L RLAD +EQ+  ++ KI  A  YP ++ ++
Sbjct: 121 ALSQHPKDFPDIYRALVAAGEHTGKLGLVLSRLADYIEQRNALKQKIVLAFTYPTIVTII 180

Query: 178 ACLVVAALMVFVIPKVVEQFDSMGQTLPLLTRLVIGLSTGLQTFGWLIVVSAVVAVFAFL 237
           A  +V  L+ +V+P+VV  F S  Q LP LT +++ LS  ++++ W ++++ V+ V    
Sbjct: 181 AFGIVTFLLSYVVPQVVNVFASTKQQLPFLTIMMMALSGFVRSYWWAMLIAVVIVVLVVR 240

Query: 238 RALRHRPFKLAVDRWLLRLPMIGRLIRDVHAARLARTLATMVASGLPVLEGLILTAGTVR 297
             L     +LA DRW L  P++G+L+R  +  R A TL  + A+G+P+L  L   + T+ 
Sbjct: 241 SILSQPGPRLAFDRWTLTAPLVGKLVRGYNTVRFASTLGILTAAGVPILRALQAASETLS 300

Query: 298 NAVLQAALDDMIAAIREGGALSVAMRRAEVFPPVLVYMTASGESSGRVEAMLMRAADYLE 357
           N  ++  +DD I  +REG +LS A+   + FPPVLV++  SGE++G V +ML RAA+   
Sbjct: 301 NRAMRGNIDDAIVRVREGTSLSRALGNTKTFPPVLVHLIRSGEATGDVTSMLDRAAEGEA 360

Query: 358 REFETFTATLLSLLEPAIIVLLGGVVATIVLSILLPILQINNL 400
            E E  T  L SLLEP +I+ +GGVV  IVL+++LPI+++NNL
Sbjct: 361 SELERRTMFLTSLLEPLLILAMGGVVLVIVLAVMLPIIELNNL 403