Pairwise Alignments

Query, 403 a.a., type II secretion pathway protein F from Caulobacter crescentus NA1000

Subject, 408 a.a., type II secretion system inner membrane protein GspF from Pectobacterium carotovorum WPP14

 Score =  290 bits (741), Expect = 7e-83
 Identities = 175/406 (43%), Positives = 254/406 (62%), Gaps = 7/406 (1%)

Query: 1   MATFDYVALDLSGRTRRGQLKAVDEAAAADQLQRKR-LAPVKIMASVAKPARVGRFALGQ 59
           MA + Y ALD  G+  RG  +A D A  A QL R+R L P+ +  +     + G   L  
Sbjct: 1   MAQYHYQALDAQGKKCRGTQEA-DSARQARQLLRERGLVPLSVDENRGDQQKSGSTGLSL 59

Query: 60  G----LSAKDRSMFTRQLATLTSVST-LEEALRTIALQADKPKLKQVIGEVHAAVLEGYR 114
                LS  D ++ TRQLATL + S  LEEAL  +A Q++KP L Q++  V + V+EG+ 
Sbjct: 60  RRKIRLSTSDLALLTRQLATLVAASLPLEEALDAVAKQSEKPHLSQLMAAVRSKVMEGHS 119

Query: 115 LSDAMGRPAKAFPPLYRAMVAAGESSGALPAILDRLADLLEQQQQVRAKITTALVYPIVL 174
           L+DAM     +F  LY AMVAAGE+SG L A+L+RLAD  EQ+QQ+R++I  A++YP VL
Sbjct: 120 LADAMKCFPGSFERLYCAMVAAGETSGHLDAVLNRLADYTEQRQQMRSRIQQAMIYPCVL 179

Query: 175 AVVACLVVAALMVFVIPKVVEQFDSMGQTLPLLTRLVIGLSTGLQTFGWLIVVSAVVAVF 234
            VVA  VV+ L+  V+PKVVEQF  M Q LPL TR+++G+S  ++TFG  ++++ +    
Sbjct: 180 TVVAIAVVSILLSVVVPKVVEQFIHMKQALPLSTRVLMGMSDAVRTFGPWMLLALLAGFM 239

Query: 235 AFLRALRHRPFKLAVDRWLLRLPMIGRLIRDVHAARLARTLATMVASGLPVLEGLILTAG 294
           AF   LR    +++  R LL LP+IGR+ R ++ AR ARTL+ + AS +P+L+ + ++  
Sbjct: 240 AFRVMLRQEKRRVSFHRRLLHLPLIGRIARGLNTARYARTLSILNASAVPLLQAMRISGD 299

Query: 295 TVRNAVLQAALDDMIAAIREGGALSVAMRRAEVFPPVLVYMTASGESSGRVEAMLMRAAD 354
            + N   +  L     A+REG +L  A+ +  +FPP++ +M ASGE SG +++ML RAAD
Sbjct: 300 VMSNDYARHRLSLATDAVREGVSLHKALEQTALFPPMMRHMIASGERSGELDSMLERAAD 359

Query: 355 YLEREFETFTATLLSLLEPAIIVLLGGVVATIVLSILLPILQINNL 400
             +REF +     L L EP ++V +  VV  IVL+IL PILQ+N L
Sbjct: 360 NQDREFSSQMTLALGLFEPLLVVSMAAVVLFIVLAILQPILQLNTL 405