Pairwise Alignments

Query, 403 a.a., type II secretion pathway protein F from Caulobacter crescentus NA1000

Subject, 407 a.a., Type II secretion system protein F from Escherichia coli HS(pFamp)R (ATCC 700891)

 Score =  273 bits (699), Expect = 5e-78
 Identities = 158/404 (39%), Positives = 244/404 (60%), Gaps = 4/404 (0%)

Query: 1   MATFDYVALDLSGRTRRGQLKAVDEAAAADQLQRKRLAPVKIMASVAKPAR---VGRFAL 57
           MA F Y AL+ +GR  +G ++A     A   L+ K L PV I A +   +      R   
Sbjct: 1   MALFYYQALERNGRKTKGMIEADSARHARQLLRGKELIPVHIEARMNTSSGGMLQRRRHA 60

Query: 58  GQGLSAKDRSMFTRQLATLTSVST-LEEALRTIALQADKPKLKQVIGEVHAAVLEGYRLS 116
            + ++A D ++FTRQLATL   +  LE  L+ ++ Q++K  +K +   + + + EGY LS
Sbjct: 61  HRRVAAADLALFTRQLATLVQAAMPLETCLQAVSEQSEKLHVKSLGMALRSRIQEGYTLS 120

Query: 117 DAMGRPAKAFPPLYRAMVAAGESSGALPAILDRLADLLEQQQQVRAKITTALVYPIVLAV 176
           D++    + F  L+ +MVAAGE SG L  +L+RLAD  EQ+Q++++++  A++YP+VL V
Sbjct: 121 DSLREHPRVFDSLFCSMVAAGEKSGHLDVVLNRLADYTEQRQRLKSRLLQAMLYPLVLLV 180

Query: 177 VACLVVAALMVFVIPKVVEQFDSMGQTLPLLTRLVIGLSTGLQTFGWLIVVSAVVAVFAF 236
           VA  VV  L+  V+PK++EQFD +G  LP  TR +I +S  LQ  G   +   +  +   
Sbjct: 181 VATGVVTILLTAVVPKIIEQFDHLGHALPATTRALIAMSDALQASGVYWLAGLLALLVLG 240

Query: 237 LRALRHRPFKLAVDRWLLRLPMIGRLIRDVHAARLARTLATMVASGLPVLEGLILTAGTV 296
            R L++   +L  D+ LLRLP+ GR+ R ++ AR +RTL+ + AS +P+LEG+   A   
Sbjct: 241 QRLLKNPAMRLRRDKTLLRLPVTGRVARGLNTARFSRTLSILTASSVPLLEGIQTAAAVS 300

Query: 297 RNAVLQAALDDMIAAIREGGALSVAMRRAEVFPPVLVYMTASGESSGRVEAMLMRAADYL 356
            N  ++  L      +REG +L  A+    +FPP+++YM ASGE SG +E ML +AA   
Sbjct: 301 ANRYVEQQLLLAADRVREGSSLRAALAELRLFPPMMLYMIASGEQSGELETMLEQAAVNQ 360

Query: 357 EREFETFTATLLSLLEPAIIVLLGGVVATIVLSILLPILQINNL 400
           EREF+T     L L EPA++V++ GVV  IV++IL P+LQ+NN+
Sbjct: 361 EREFDTQVGLALGLFEPALVVMMAGVVLFIVIAILEPMLQLNNM 404