Pairwise Alignments

Query, 211 a.a., RNA polymerase sigma factor from Ralstonia sp. UNC404CL21Col

Subject, 197 a.a., RNA polymerase subunit sigma from Pontibacter actiniarum KMM 6156, DSM 19842

 Score = 94.4 bits (233), Expect = 1e-24
 Identities = 60/171 (35%), Positives = 94/171 (54%), Gaps = 8/171 (4%)

Query: 17  RFAQAVLPHVDAAYNLARWLSGDAQDADDIVQEACLRAFRLFGGF-RGGDGRPWLLAIVR 75
           RF   +LP +D  YN A  L+ D  DA+D+VQE  L+A+R F  F +G + + WL  I++
Sbjct: 17  RFEAELLPVLDPLYNFAYRLTLDEDDANDLVQETYLKAYRFFDYFEQGTNAKAWLFRILK 76

Query: 76  NTWFSECARRKQAPAQ-PWDDDAAAGQAHDDSASYGIDPAALLARIDDVR-----RVHVA 129
           N++ +E  ++ + PA+  + +      + D     G+     + R + V+      V  A
Sbjct: 77  NSFINEFRKKSKQPAKVDYSEVEGYYNSEDVEGESGVASTTDM-RTESVQDLIGDEVASA 135

Query: 130 LAQLPVPYREVLVLRELEDLPYRDIAAVVDAPIGTVMSRLARARQQLARLL 180
           L  LPV +R V++L +LE   Y ++A ++D PIGTV SRL RAR  L   L
Sbjct: 136 LNALPVDFRTVIILCDLEGFTYEEMAKILDIPIGTVRSRLHRARNSLKEKL 186