Pairwise Alignments

Query, 821 a.a., poly-beta-1,6 N-acetyl-D-glucosamine export porin PgaA from Ralstonia sp. UNC404CL21Col

Subject, 807 a.a., predicted outer membrane protein (NCBI) from Escherichia coli BW25113

 Score =  117 bits (294), Expect = 2e-30
 Identities = 122/564 (21%), Positives = 232/564 (41%), Gaps = 22/564 (3%)

Query: 268 ERFVIIDQAVAEIEALLKKVPDTPENAEFRQEIVADEVVALSSRGRMKDAVKRYEAMSQT 327
           ER+ I D+A+A+  AL     D P+     Q I  D + AL +R R KD +  Y+ + +T
Sbjct: 248 ERYAIADRALAQYAALEILWHDNPDRTAQYQRIQVDHLGALLTRDRYKDVISHYQRLKKT 307

Query: 328 GKV-PAYTRVAAGDAYAYLDTPDKAAAAYAQAL--KDASPGEIETGDVQEGLFYAMLDTG 384
           G++ P + +     AY     P KA +   +    K+    ++   ++ + LFY+ L++ 
Sbjct: 308 GQIIPPWGQYWVASAYLKDHQPKKAQSIMTELFYHKETIAPDLSDEELAD-LFYSHLESE 366

Query: 385 RFEDARALLDKMKADNPEYVRLAPEAGTPNPDYSRIKRLEAQYLILTGRTHQGIAELDKW 444
            +  A  +       +P ++RL    GTP    +        +L    +    + + +  
Sbjct: 367 NYPGALTVTQHTINTSPPFLRLM---GTPTSIPNDTWLQGHSFLSTVAKYSNDLPQAEMT 423

Query: 445 RHEAPF-AASLVSARADGAMVQTE---PYRSREMYKTALAEHPDDLSVVAGYGRASLAVD 500
             E  + A      R D A V      P  +    K A    P ++++       +L + 
Sbjct: 424 ARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVIEPRNINLEVEQAWTALTLQ 483

Query: 501 DLKTAKDVANGLDERFPENGSVRALRKDLDVYQSPQLIIESTA--DKGNSVFANNEFGVS 558
           + + A  + + + ER P++  V  L++ +DV+   +L I  +   D        ++  ++
Sbjct: 484 EWQQAAVLTHDVVEREPQDPGVVRLKRAVDVHNLAELRIAGSTGIDAEGPDSGKHDVDLT 543

Query: 559 TKAYSGPFADHYRLFFHNFAGRAQFDGATQSR---VRNG-AGLQWFDTGVEVNGEVHQSV 614
           T  YS P  D++R     FAG    DG        VR+  AG++W    + +  E  + V
Sbjct: 544 TIVYSPPLKDNWR----GFAGFGYADGQFSEGKGIVRDWLAGVEWRSRNIWLEAEYAERV 599

Query: 615 -GAAGKTGGTLDATWIPSDHWKVSGLVTTDDLEVPYKAYQVGVTGKTLSGNVRYTWDETR 673
                K G  L   +  +D+W++   +      VP +A + GVTG +    VR+  +E R
Sbjct: 600 FNHEHKPGARLSGWYDFNDNWRIGSQLERLSHRVPLRAMKNGVTGNSAQAYVRWYQNERR 659

Query: 674 YASLTYGVSRYSDDNLRQRWAANFYQQVFTSPRHTVGVLLGADTSNNTMTGLNYFSPSRD 733
              +++  + +SD N R   +    +++++SP   V  L       NT     Y++P + 
Sbjct: 660 KYGVSWAFTDFSDSNQRHEVSLEGQERIWSSPYLIVDFLPSLYYEQNTEHDTPYYNPIKT 719

Query: 734 YSGTATAIWSWTPWRYADKSFTQRLYLTGGVYNQQSFGNSPMMEARLEHVWQINRKTQVS 793
           +        S   WR  + S+ Q      G   Q+ +G   + +         N      
Sbjct: 720 FDIVPAFEASHLLWRSYENSWEQIFSAGVGASWQKHYGTDVVTQLGYGQRISWNDVIDAG 779

Query: 794 YGIGFGRHRYDGQPENRKFLYLNL 817
             + + +  YDG  E+  ++  ++
Sbjct: 780 ATLRWEKRPYDGDREHNLYVEFDM 803



 Score = 27.3 bits (59), Expect = 0.004
 Identities = 20/82 (24%), Positives = 33/82 (40%), Gaps = 4/82 (4%)

Query: 329 KVPAYTRVAAGDAYAYLDTPDKAAAAYAQALKDASPGEIETGDVQEGLFYAMLDTGRFED 388
           ++PA    A   AY  L     +   + +AL      E +  D Q G    + D G ++ 
Sbjct: 95  QLPARGYAAVAVAYRNLQQWQNSLTLWQKALSL----EPQNKDYQRGQILTLADAGHYDT 150

Query: 389 ARALLDKMKADNPEYVRLAPEA 410
           A   L ++ +  P+   L  EA
Sbjct: 151 ALVKLKQLNSGAPDKANLLAEA 172