Pairwise Alignments

Query, 1079 a.a., error-prone DNA polymerase from Ralstonia sp. UNC404CL21Col

Subject, 1167 a.a., DNA polymerase III, alpha chain from Agrobacterium fabrum C58

 Score =  334 bits (857), Expect = 2e-95
 Identities = 311/1094 (28%), Positives = 496/1094 (45%), Gaps = 106/1094 (9%)

Query: 11   PAYAELHCISNFTFLTGASHPYELVERAKLYGYQALALTDECSVAGTARALVASKEYELK 70
            P +  L   S ++ L GA    +++ +A   G  A+A+TD  ++         +++  L+
Sbjct: 18   PGFVHLRVHSAYSLLEGALPLKKIMSKAVGDGQPAIAITDTNNLFVALEFSEKARDEGLQ 77

Query: 71   LIIGSRFTVRNADGEPWLR-----------LVLLAQNIEGYGNLSEIITHARLAAPKGEY 119
             IIG + ++   D     R           +VLLA N EGY  L ++++ A L    G +
Sbjct: 78   PIIGCQLSIDMQDAAEDRRNHNSHLQKLPAIVLLAANAEGYERLVDLVSRAYLDGEGGSH 137

Query: 120  RL------LADDLAAPKGELAHLRGVPDCLAILLPDYDPDPQQLLAQAWWCQRVFGDRLS 173
             +      L +   A    L    G P  +A+         ++LL      + +FGDRL 
Sbjct: 138  SVHITRAWLEEASNAGLIALTGASGGPVDMALKEGHAAQAKERLLT----LKSLFGDRLY 193

Query: 174  IALELPLRHADDRHRGTVGAVSEQIDVPMVATSGVQMHTRQRKPLHDVLTAIRLSKPLSE 233
            I L+    +     R  +G   E  D+P+VAT+     ++     HD L A+  +  +S+
Sbjct: 194  IELQRQSGYDRSHERRLIGLAYEH-DIPLVATNEAFFPSKADYEAHDALMAVAHNAIVSD 252

Query: 234  CG-LELAPSAEQAMRTRVQLSYLYQGERGKRILRRTVELAALCNFSLDEIQYEYP----S 288
                 L P  +  +++R +++ L+        L  TVE+A  C++ L +     P    +
Sbjct: 253  DSRFRLTP--DHYLKSRDEMTALFADL--PEALENTVEIALRCSYVLKKRGPILPRFTGA 308

Query: 289  EVVPEGMTPAEY--LHAETLAGAARRY------PNGVSEKVREQIQEELGLIAELGYEPF 340
               PE    AE   L  + + G  +R       P    +  RE++  ELG+I+ + +  +
Sbjct: 309  SDDPEAAERAETEELRRQAVEGLDQRLSALGMAPGYTEQDYRERLDFELGVISRMKFPGY 368

Query: 341  FLTVYDVVKFARNEGI-LCQGRGSAANSAVCYCLGITEVNPDSGNTLFARFLSRARNEPP 399
            FL V D +K+A+ + I +  GRGS A S V Y L IT+V+P   + LF RFL+  R   P
Sbjct: 369  FLIVADFIKWAKQQDIPVGPGRGSGAGSLVAYALTITDVDPLRFSLLFERFLNPERVSMP 428

Query: 400  DIDVDFEHQRREEVIQYIYKKYGVTRTALAAALITYRTRSALRDVGRALGIDLGIIEQVA 459
            D D+DF   RREEVI+Y+ +KYG  + A      + + R+ALRDVGR L +  G ++++ 
Sbjct: 429  DFDIDFCQDRREEVIRYVQRKYGREQVAQIITFGSLQARAALRDVGRVLEMPYGQVDKIC 488

Query: 460  KGQAWWDSRKEFVQRA------GQQGLDPESPLVLRWAQLVDQLRGFPRHLSQHVGGFVI 513
            K      +    + +A       Q+  D E P+V R   +  ++ G  RH S H  G VI
Sbjct: 489  KLVPNNPANPTPLSKAIEEEPRLQEEADKE-PVVARLLDIAQKIEGLYRHASTHAAGIVI 547

Query: 514  AQGKLSRLVPIENAAMENRRVIQWDKDDLESLRLLKVDVLALGMLTAIRRTLDMVDALPG 573
                LS+LVP+      +  V Q++   +ES  L+K D L L  LT ++  +D V     
Sbjct: 548  GDRPLSKLVPMYRDPRSDMPVTQFNMKWVESAGLVKFDFLGLKTLTVLKVAVDFV----- 602

Query: 574  RREHYGATTKLAMQNLHDGDKKTYDMICRAETIGVFQIESRAQQSMLPRLRPREYYDLVI 633
                 G    LA   L D   KTY+M+ R ETIGVFQ+ES   +  L  +RP    D++ 
Sbjct: 603  --AKRGIKVDLAAIPLEDA--KTYEMLSRGETIGVFQVESAGMRKALIGMRPDCIEDIIA 658

Query: 634  QVAIVRPGPIQGGMVHPYLQRREAKRNGNTDCVTYPGPEVKAVLERTLGVPIFQEQVMEI 693
             VA+ RPGP++   V+       A+++G  +  +   P +  +L+ T GV ++QEQVM+I
Sbjct: 659  LVALYRPGPMENIPVY------NARKHGEEELESI-HPTIDHLLKETQGVIVYQEQVMQI 711

Query: 694  AMKAGDFTPDDADRLRRDMAAWKRKGNLTQHQERLVHAMVEKRGYDPAFVEALCKQMEGF 753
            A     ++  +AD LRR M   K K  + Q +ER V   + K G        +   +  F
Sbjct: 712  AQVLSGYSLGEADLLRRAMGK-KIKEEMDQQRERFVDGAI-KNGVSKPQANTIFDLLAKF 769

Query: 754  AEYGFPESHAAGFAKLAYVSSFLKCHEPAAFFAALLNSQPMGFYSPSQLVQEARRSHVRV 813
            A YGF +SHAA +A ++Y ++++K H P  F AA +          +   Q+A R  + V
Sbjct: 770  ANYGFNKSHAAAYAIVSYQTAYMKAHYPVEFLAASMTLDMANTEKLNDFRQDAGRLGIEV 829

Query: 814  LPADVTASVWDSTLHLRADGEVGENGLVQPDIRLGLNRIRGMRKPAAERIEAARAQAPFT 873
            +   V  S            E GEN      I   L  I+G+ + A E I   R + PFT
Sbjct: 830  VAPSVQTSF--------RQFETGEN-----RIYYSLAAIKGVGEGAVEHIVQVRGEKPFT 876

Query: 874  SVEDLAHR---AALDRHDLNVLAAANALKSLAGHRRQ---ALWQTLALQEPGHDHALLRQ 927
            S+ED   R     ++R  L  L  A A       R +    L + +   +   ++  + Q
Sbjct: 877  SLEDFCLRIDPKQINRRVLESLINAGAFDCFGRDRAELIGGLDRIIGYAQMAQNNRTIGQ 936

Query: 928  ARPV-----EAPLELPAPPI-----GEEVMADYGSLGLSLQSHPLRLLRARLERMR---F 974
            +          P +L  P        E+++ +Y  LG  L +HPL   R  LE++R   F
Sbjct: 937  SDMFGSGGGTGPEKLILPAFQSWLPSEKLIREYQVLGFYLTAHPLDTYRPLLEKLRVQNF 996

Query: 975  ATAATLAGYRNGQLARACGIVTVRQ--RPGTANGTIFVSIEDETGAINVILWPH------ 1026
            A  +         + R  G VT +Q  +  T N    V+  D +G    +L+        
Sbjct: 997  ADFSAAVKQGASTVGRLAGTVTGKQERKTRTGNKMGIVTFSDASGQYEAVLFSEGLAQFR 1056

Query: 1027 -LIERQRREVLNAQ 1039
             L+E  +  V+N Q
Sbjct: 1057 DLLEVGKSLVINVQ 1070