Pairwise Alignments

Query, 188 a.a., RNA polymerase sigma factor from Ralstonia sp. UNC404CL21Col

Subject, 247 a.a., ECF RNA polymerase sigma factor SigR from Xanthobacter sp. DMC5

 Score = 51.6 bits (122), Expect = 1e-11
 Identities = 44/164 (26%), Positives = 68/164 (41%), Gaps = 13/164 (7%)

Query: 18  AFKQAVFAVRDDDAALDIVQDAMIKLAEKYGDKPGAELPLLFQRILQNTIHDWFRRSKVR 77
           A+  A +  RD DAA DIVQDA ++    + D  G         I++N    W R  + R
Sbjct: 80  AYTLARYLTRDADAAQDIVQDAYLRAYRAFADFKGGSARAWLLAIVRNCHLTW-RDLRRR 138

Query: 78  NTWVSLFSSFRTDAEGDDTDPLELI---ESEAGTTAAESSADKVERSQMLEILEREIEKL 134
                   +   +  GD  D ++L+   E+        S AD+V  +         +E L
Sbjct: 139 EMQRRAPDAVAAEEGGDPEDAIDLLVDGETPETILLRRSQADRVRGT---------LELL 189

Query: 135 PTRQREAFLMRYWEDMDVAETAQAMGCSEGSVKTHCSRATHALA 178
           P   RE  ++R  +++   E A   G   G+V +  SRA    A
Sbjct: 190 PEPLREVLVLRELDELSYREIADVAGVPVGTVMSRLSRARRHFA 233