Pairwise Alignments

Query, 188 a.a., RNA polymerase sigma factor from Ralstonia sp. UNC404CL21Col

Subject, 183 a.a., RNA polymerase ECF-type sigma factor from Variovorax sp. SCN45

 Score = 50.1 bits (118), Expect = 2e-11
 Identities = 45/150 (30%), Positives = 69/150 (46%), Gaps = 18/150 (12%)

Query: 25  AVRDDDAALDIVQDAMIK-LAEKYGDKPGAELPLLFQRILQNTIHDWFRRSKVRNTWVSL 83
           A+R+ DAA DIVQ++  + LA +    P  +   L  +  ++ + D  RR+ +R      
Sbjct: 16  ALRNRDAAADIVQESYARVLAIERSSVPIGDPRALLYQTARHVMVDQHRRNLLR------ 69

Query: 84  FSSFRTDAEGDDTDPLELIESEAGTTAAESSADKVERS-QMLEILEREIEKLPTRQREAF 142
                   E DD   L   ESE     A    D +  S Q ++     IE LP R REAF
Sbjct: 70  --------EHDDLAALS--ESEQPVLPAHLQPDAILASAQAVQAYVATIEALPPRCREAF 119

Query: 143 LMRYWEDMDVAETAQAMGCSEGSVKTHCSR 172
           ++  ++ +  AE A  MG S   ++ H +R
Sbjct: 120 VLHVFDGLSHAEIAARMGASVSMIEKHVAR 149