Pairwise Alignments

Query, 188 a.a., RNA polymerase sigma factor from Ralstonia sp. UNC404CL21Col

Subject, 188 a.a., DNA-directed RNA polymerase specialized sigma subunit, sigma24-like from Variovorax sp. SCN45

 Score =  220 bits (560), Expect = 1e-62
 Identities = 113/188 (60%), Positives = 139/188 (73%)

Query: 1   MASEQELSAFLLSVEKRAFKQAVFAVRDDDAALDIVQDAMIKLAEKYGDKPGAELPLLFQ 60
           +A+E ELS FL SVE+RAFK++V+ VRD++AALDIVQD+M+KLA+ YGDKP  ELP+LFQ
Sbjct: 1   LATELELSDFLKSVERRAFKRSVYHVRDEEAALDIVQDSMMKLAQHYGDKPANELPMLFQ 60

Query: 61  RILQNTIHDWFRRSKVRNTWVSLFSSFRTDAEGDDTDPLELIESEAGTTAAESSADKVER 120
           RIL N   DWFRR K R    S  S F +  +  D D LE   S   +  +ES+ D   R
Sbjct: 61  RILSNCTLDWFRRQKTRRALFSNLSDFDSVDDDGDFDLLENFVSPTDSRESESAEDTTRR 120

Query: 121 SQMLEILEREIEKLPTRQREAFLMRYWEDMDVAETAQAMGCSEGSVKTHCSRATHALAQA 180
           +Q+   +E +I  LP RQREAFLMRYWE+MDVAETA AMGCSEGSVKTHCSRA HAL++A
Sbjct: 121 AQVFHEIEEQIAALPGRQREAFLMRYWEEMDVAETAAAMGCSEGSVKTHCSRAVHALSKA 180

Query: 181 LRARGIRL 188
           L+A+GI L
Sbjct: 181 LKAKGISL 188