Pairwise Alignments

Query, 696 a.a., excinuclease ABC subunit UvrB from Ralstonia sp. UNC404CL21Col

Subject, 673 a.a., exision nuclease of nucleotide excision repair, DNA damage recognition component from Escherichia coli BL21

 Score =  884 bits (2285), Expect = 0.0
 Identities = 449/670 (67%), Positives = 531/670 (79%), Gaps = 5/670 (0%)

Query: 23  PFQLYQPYPPAGDQPEAIRQLVENIEDGLSYQTLLGVTGSGKTFTMANVIAQVGRPAIVF 82
           PF+L   + P+GDQPEAIR+L E +EDGL++QTLLGVTGSGKTFT+ANVIA + RP +V 
Sbjct: 4   PFKLNSAFKPSGDQPEAIRRLEEGLEDGLAHQTLLGVTGSGKTFTIANVIADLQRPTMVL 63

Query: 83  APNKTLAAQLYSEFREFFPRNAVEYFVSYYDYYQPEAYVPQRDLFIEKDSSINEHIEQMR 142
           APNKTLAAQLY E +EFFP NAVEYFVSYYDYYQPEAYVP  D FIEKD+S+NEHIEQMR
Sbjct: 64  APNKTLAAQLYGEMKEFFPENAVEYFVSYYDYYQPEAYVPSSDTFIEKDASVNEHIEQMR 123

Query: 143 LSATKSLLERRDVVIVATVSAIYGIGNPSEYHQMILTLRAGDKVSQRDVIARLIAMQYTR 202
           LSATK++LERRDVV+VA+VSAIYG+G+P  Y +M+L L  G  + QR ++ RL  +QY R
Sbjct: 124 LSATKAMLERRDVVVVASVSAIYGLGDPDLYLKMMLHLTVGMIIDQRAILRRLAELQYAR 183

Query: 203 NETDFQRGTFRVRGDTVDIFPAEHAEMAVRLELFDDEVESLQLFDPLTGRVRQKIPRFTV 262
           N+  FQRGTFRVRG+ +DIFPAE  ++A+R+ELFD+EVE L LFDPLTG++   IPRFT+
Sbjct: 184 NDQAFQRGTFRVRGEVIDIFPAESDDIALRVELFDEEVERLSLFDPLTGQIVSTIPRFTI 243

Query: 263 YPSSHYVTPRETVLRAIETIKAELRERLDFFYKENKLVEAQRLEQRTRFDLEMLQELGFC 322
           YP +HYVTPRE +++A+E IK EL  R     + NKL+E QRL QRT+FDLEM+ ELG+C
Sbjct: 244 YPKTHYVTPRERIVQAMEEIKEELAARRKVLLENNKLLEEQRLTQRTQFDLEMMNELGYC 303

Query: 323 KGIENYSRHLSGSAPGEPPPTLVDYLPPDALMFLDESHVLIGQLNGMYNGDRARKETLAE 382
            GIENYSR LSG  PGEPPPTL DYLP D L+ +DESHV I Q+ GMY GDRARKETL E
Sbjct: 304 SGIENYSRFLSGRGPGEPPPTLFDYLPADGLLVVDESHVTIPQIGGMYRGDRARKETLVE 363

Query: 383 YGFRLPSALDNRPLKFAEFETKMRQVTFVSATPGDYEKKTAGTEVVEQVVRPTGLVDPII 442
           YGFRLPSALDNRPLKF EFE    Q  +VSATPG+YE + +G +VV+QVVRPTGL+DPII
Sbjct: 364 YGFRLPSALDNRPLKFEEFEALAPQTIYVSATPGNYELEKSGGDVVDQVVRPTGLLDPII 423

Query: 443 EVRPATTQVDDLLSEIHVRVEAGERVLVTTLTKRMAEQLTEFLSENGIKVRYLHSDIDTV 502
           EVRP  TQVDDLLSEI  R    ERVLVTTLTKRMAE LTE+L E+G +VRYLHSDIDTV
Sbjct: 424 EVRPVATQVDDLLSEIRQRAAINERVLVTTLTKRMAEDLTEYLEEHGERVRYLHSDIDTV 483

Query: 503 ERVEIIRDLRLGTFDVLVGINLLREGLDIPEVSLVAILDADKEGFLRAERSLIQTIGRAA 562
           ER+EIIRDLRLG FDVLVGINLLREGLD+PEVSLVAILDADKEGFLR+ERSLIQTIGRAA
Sbjct: 484 ERMEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVAILDADKEGFLRSERSLIQTIGRAA 543

Query: 563 RNVNGTAILYADRMTDSMKKAIDETERRRAKQIAHNEAHGITPRGVVKRIKDIIDGVYNV 622
           RNVNG AILY D++T SM KAI ETERRR KQ  +NE HGITP+G+ K++ DI+    N+
Sbjct: 544 RNVNGKAILYGDKITPSMAKAIGETERRREKQQKYNEEHGITPQGLNKKVVDILALGQNI 603

Query: 623 DDARAELKAAQEAAKYE-----DMSEKQASKEIKRLEKQMLDHAKNLEFEKAAAVRDQLA 677
              +A+ +              DMS K   ++I  LE  M+ HA+NLEFE+AA +RDQL 
Sbjct: 604 AKTKAKGRGKSRPIVEPDNVPMDMSPKALQQKIHELEGLMMQHAQNLEFEEAAQIRDQLH 663

Query: 678 KLKSQLFGAS 687
           +L+     AS
Sbjct: 664 QLRELFIAAS 673