Pairwise Alignments

Query, 503 a.a., RNA polymerase factor sigma-54 from Ralstonia sp. UNC404CL21Col

Subject, 474 a.a., RNA polymerase sigma-54 factor RpoN from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  346 bits (887), Expect = 1e-99
 Identities = 205/498 (41%), Positives = 280/498 (56%), Gaps = 37/498 (7%)

Query: 5   LQLRLSQHLALTPQLQQSIRLLQLSTIELQQEVEQALTENPLLERENEWLDTSARIGADG 64
           L  R  Q   L+P+LQ ++RLLQ+S+++    V   L  NP LE E+E            
Sbjct: 4   LDARAEQRQTLSPRLQHAVRLLQMSSLDFGIVVRDVLGRNPFLEAEDE------------ 51

Query: 65  SVSALQSNSATPLPTESPSPAPNGGDNSDSADNSYENGHDSGADFDSDYGSDRSDWSLDD 124
                           +   A +GG      D   + G D+ A+  +   SDR  W  D 
Sbjct: 52  ----------------AAEEARDGGP-----DTRPDEGRDAQAEPPA--ASDRDLWLADG 88

Query: 125 FARKPQSDEDDRAPLQLREAEQSLREFLMEQLAPLKLSMRDKGLVIFLIESLDDEGYLSG 184
            A   Q  + D + L     E  L   L  QL  + LS RD  L   ++ESLDD+GYL  
Sbjct: 89  LAPARQGHDGDVSALDFVMEEVPLNAHLHAQLGTMALSPRDLALAGVVVESLDDDGYLRS 148

Query: 185 TLDEILADLPAELEVELDELQAALRMLQSFDPPGIGARSAAECLSLQLHRLDSP-AKALA 243
            L  +           L++LQ AL+++QS +P G+ AR  AECLSLQL  ++ P  +A+A
Sbjct: 149 PLTALCGVAAVTPAATLEDLQIALKLVQSLEPVGVAARDVAECLSLQLGEIECPHLRAMA 208

Query: 244 LIIVNQHLELLAARDYTRLKKALSVDEPALKAAHELIRSLAPFPGHAFGRAEADFVVPDV 303
             IV+ HL  LAARD   + +AL      ++ A + IR L P PG     ++ +++VPDV
Sbjct: 209 RTIVHGHLHSLAARDVPAMARALGASAGEVEMACDRIRHLDPRPGWRQSSSQVNWIVPDV 268

Query: 304 VVRKTSAGWMAQLNPDVMPRLRINDMYAQILRSSRGESGAANLQQKLQEARWLIKNIQQR 363
           +VRK    W  QLN  V+PR+R+N++YAQ+ +  RG      +   LQEARW ++N++QR
Sbjct: 269 IVRKDRGVWDVQLNAAVVPRVRLNEVYAQLFQRHRGAENT-EMGAHLQEARWTVRNVEQR 327

Query: 364 FDTILRVSQAIVERQKSFFTHGEIAMRPLVLREIADTLGLHESTISRVTTNKYMATPMGT 423
           F TIL VSQAIV RQ+ FF +G +AM+PL LREIAD +G+HEST+SRVT NKYMATP G 
Sbjct: 328 FSTILDVSQAIVRRQRHFFEYGSMAMKPLGLREIADEVGVHESTVSRVTNNKYMATPTGV 387

Query: 424 FELKYFFGSHVSTETGGAASSTAIRALIKQLVGAEDPKNPLSDSRIAELLGEQGFVVARR 483
           +ELK+FF   + +  G A S TAIR LI+ ++ +E    PLSD+ I   L  QG  VARR
Sbjct: 388 YELKHFFSRAMVSANGKACSGTAIRGLIQDIIESESTGQPLSDAEITRQLARQGLTVARR 447

Query: 484 TVAKYREALKIPAVNLRK 501
           TV KYR+ L+I AV  RK
Sbjct: 448 TVTKYRQMLRIDAVGRRK 465