Pairwise Alignments

Query, 503 a.a., RNA polymerase factor sigma-54 from Ralstonia sp. UNC404CL21Col

Subject, 542 a.a., RNA polymerase sigma-54 factor RpoN from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  458 bits (1179), Expect = e-133
 Identities = 276/543 (50%), Positives = 346/543 (63%), Gaps = 41/543 (7%)

Query: 1   MKQSLQLRLSQHLALTPQLQQSIRLLQLSTIELQQEVEQALTENPLLERENEWLD--TSA 58
           +KQ L LR+SQHLALTPQLQQSIRLLQLST+E+ QEVEQ L ENP LER  E  +  T  
Sbjct: 1   VKQGLSLRVSQHLALTPQLQQSIRLLQLSTLEMAQEVEQMLDENPFLERSEEIAERETFG 60

Query: 59  RIGADGSVSALQSNSATPLPTESPSPAPNGGDNS----DSADNSYENGHDSGA------- 107
               D  VSA +  +   +P ++P+P  +  +++    DS D     G   GA       
Sbjct: 61  LEQTDVPVSAGEQIAEAAVP-DAPAPLSSSPESTSASTDSGDGDGLEGKLDGATPVEESW 119

Query: 108 --DFDSDYGSDRSDWSLDDFARKPQSDEDDR--APLQLREAEQSLREFLMEQLAPLKLSM 163
             D   +   D S+W  D  AR   S + D   +   L  A  SL++ L +Q   L+LS 
Sbjct: 120 EGDGTVEMSPDDSEWGGDAPARNSGSGDSDETASAADLARAPVSLQDHLHDQARCLRLSD 179

Query: 164 RDKGLVIFLIESLDDEGYLSGTLDEI------------LADLPAEL----EVELDELQAA 207
            D+  + FLIESL+D+GYL   L ++            LA  P E     E     L  A
Sbjct: 180 EDRAALYFLIESLNDDGYLEENLSDLADAWLHLSGMPQLAGDPNEALEAREALEQRLAVA 239

Query: 208 LRMLQSFDPPGIGARSAAECLSLQLHRLDSPAKA-LALIIVNQHLELLAARDYTRLKKAL 266
           L++LQ  +P G+GAR   ECL LQ+  L + A+A  AL I NQ LEL+A RD  RL    
Sbjct: 240 LQLLQHMEPSGVGARDLGECLRLQILELRNTAEARAALAICNQPLELMAKRDVKRLCNLC 299

Query: 267 SVDEPALKAAHELIRSLAPFPGHAFGRAEADFVVPDVVVRKTSAGWMAQLNPDVMPRLRI 326
            +D+  ++AA  LI  L P PG  F   E + VVPDV+V +   G+   LNPDVMPRLR+
Sbjct: 300 GLDDETVRAALGLIARLEPKPGRRFVDVERNVVVPDVIVTRAGRGFKVILNPDVMPRLRV 359

Query: 327 NDMYAQILRSSRG------ESGAANLQQKLQEARWLIKNIQQRFDTILRVSQAIVERQKS 380
           +D+YA  +R +RG      E+G A +QQ+LQEARW IKNIQQRFDTILRVS AIVERQ++
Sbjct: 360 HDVYANAMRQNRGGRDSGGEAGHAAMQQRLQEARWFIKNIQQRFDTILRVSSAIVERQRN 419

Query: 381 FFTHGEIAMRPLVLREIADTLGLHESTISRVTTNKYMATPMGTFELKYFFGSHVSTETGG 440
           FF HGE+AMRPLVLREIAD LGLHESTISRVTT KYMATP GT+ELKYFFGS + TETGG
Sbjct: 420 FFMHGELAMRPLVLREIADELGLHESTISRVTTAKYMATPFGTYELKYFFGSSLGTETGG 479

Query: 441 AASSTAIRALIKQLVGAEDPKNPLSDSRIAELLGEQGFVVARRTVAKYREALKIPAVNLR 500
            ASSTA+RAL+KQ + +E+P  PLSD+++++LL EQG   ARRTVAKYREAL+I   NLR
Sbjct: 480 NASSTAVRALLKQFIASEEPAKPLSDNQLSDLLREQGIECARRTVAKYREALRIAPANLR 539

Query: 501 KSL 503
           K+L
Sbjct: 540 KAL 542