Pairwise Alignments

Query, 503 a.a., RNA polymerase factor sigma-54 from Ralstonia sp. UNC404CL21Col

Subject, 477 a.a., DNA-directed RNA polymerase subunit N (NCBI) from Escherichia coli BW25113

 Score =  406 bits (1043), Expect = e-117
 Identities = 227/506 (44%), Positives = 319/506 (63%), Gaps = 33/506 (6%)

Query: 1   MKQSLQLRLSQHLALTPQLQQSIRLLQLSTIELQQEVEQALTENPLLERENEWLDTSARI 60
           MKQ LQLRLSQ LA+TPQLQQ+IRLLQLST+ELQQE++QAL  NPLLE+ +   +   R 
Sbjct: 1   MKQGLQLRLSQQLAMTPQLQQAIRLLQLSTLELQQELQQALESNPLLEQIDTHEEIDTRE 60

Query: 61  GADG-SVSALQSNSATPLPTESPSPAPNGGDNSDSADNSYENGHDSGADFDSDYGSDRSD 119
             D  ++    +     +P E P  A        S D  Y  G  SG     DY      
Sbjct: 61  TQDSETLDTADALEQKEMPEELPLDA--------SWDTIYTAGTPSGTS--GDY------ 104

Query: 120 WSLDDFARKPQSDEDDRAPLQLREAEQSLREFLMEQLAPLKLSMRDKGLVIFLIESLDDE 179
                         DD  P+   E  Q+L+++LM Q+     S  D+ +   +++++D+ 
Sbjct: 105 -------------IDDELPVYQGETTQTLQDYLMWQVELTPFSDTDRAIATSIVDAVDET 151

Query: 180 GYLSGTLDEILADLPAELEVELDELQAALRMLQSFDPPGIGARSAAECLSLQLHRLDSPA 239
           GYL+  L++IL  +  E E+++DE++A L+ +Q FDP G+ A+   +CL +QL + D   
Sbjct: 152 GYLTVPLEDILESIGDE-EIDIDEVEAVLKRIQRFDPVGVAAKDLRDCLLIQLSQFDKTT 210

Query: 240 KAL--ALIIVNQHLELLAARDYTRLKKALSVDEPALKAAHELIRSLAPFPGHAFGRAEAD 297
             L  A +I++ HL+LLA  D+  L +   + E  LK A  LI+SL P PG +    E +
Sbjct: 211 PWLEEARLIISDHLDLLANHDFRTLMRVTRLKEDVLKEAVNLIQSLDPRPGQSIQTGEPE 270

Query: 298 FVVPDVVVRKTSAGWMAQLNPDVMPRLRINDMYAQILRSSRGESGAANLQQKLQEARWLI 357
           +V+PDV+VRK +  W  +LN D +PRL+IN  YA +  ++R +  +  ++  LQ+A+WLI
Sbjct: 271 YVIPDVLVRKHNGHWTVELNSDSIPRLQINQHYASMCNNARNDGDSQFIRSNLQDAKWLI 330

Query: 358 KNIQQRFDTILRVSQAIVERQKSFFTHGEIAMRPLVLREIADTLGLHESTISRVTTNKYM 417
           K+++ R DT+LRVS+ IVE+Q++FF  GE  M+P+VL +IA  + +HESTISRVTT KY+
Sbjct: 331 KSLESRNDTLLRVSRCIVEQQQAFFEQGEEYMKPMVLADIAQAVEMHESTISRVTTQKYL 390

Query: 418 ATPMGTFELKYFFGSHVSTETGGAASSTAIRALIKQLVGAEDPKNPLSDSRIAELLGEQG 477
            +P G FELKYFF SHV+TE GG ASSTAIRAL+K+L+ AE+P  PLSDS++  LL EQG
Sbjct: 391 HSPRGIFELKYFFSSHVNTEGGGEASSTAIRALVKKLIAAENPAKPLSDSKLTSLLSEQG 450

Query: 478 FVVARRTVAKYREALKIPAVNLRKSL 503
            +VARRTVAKYRE+L IP  N RK L
Sbjct: 451 IMVARRTVAKYRESLSIPPSNQRKQL 476