Pairwise Alignments

Query, 665 a.a., NAD-dependent DNA ligase LigA from Phocaeicola vulgatus CL09T03C04

Subject, 785 a.a., DNA ligase (EC 6.5.1.2) from Pseudomonas fluorescens GW456-L13

 Score =  443 bits (1139), Expect = e-128
 Identities = 250/602 (41%), Positives = 352/602 (58%), Gaps = 25/602 (4%)

Query: 6   RIDQLREELHRHNYNYYVLNAPEITDQEFDKLMRELQDLEEKHPEHRDENSPSMRVGSDI 65
           RI +LR EL +HNY Y+VL+ P I D E+D+L  EL+ LE  +PE    +SP+ RVGS  
Sbjct: 7   RILELRAELDQHNYRYHVLDEPSIPDAEYDRLFSELKALEAANPELITSDSPTQRVGSAA 66

Query: 66  NKNFTQVVHKYPMLSLANTYSETEVTEFYDRVKKSLN----------EDFEICCEMKYDG 115
              FTQV H+ PMLSL N + ET++ EF  RV + L+             E  CE K DG
Sbjct: 67  LSAFTQVRHEVPMLSLGNAFEETDMREFDRRVTEGLDLPAGDLFGGGATVEYSCEPKLDG 126

Query: 116 TSISLTYENGKLVRAVTRGDGVQGDDVTGNVKTIRSIPLVLHGKGYPETFEIRGEILMPW 175
            ++SL Y++G LVR  TRGDG  G+D++ NV+T+R+IPL LHG G+P T E+RGE+ M  
Sbjct: 127 LAVSLLYQDGVLVRGATRGDGTTGEDISVNVRTVRNIPLKLHGTGWPATLEVRGEVFMSK 186

Query: 176 VVFEELNKEREAREEPLFANPRNAASGTLKLQNSAIVASRKLDAYLYYLLGDNLP--CDG 233
             FE LN  +       FANPRNAA+G+L+  +S I A+R L+ +  Y +G       D 
Sbjct: 187 AGFERLNATQLEVGGKTFANPRNAAAGSLRQLDSKITANRPLE-FCCYGIGQVSADIADT 245

Query: 234 HYENLKEAEKWGFKISDLTRKCKTLQEVFDFIKYWDVERKNLPVATDGIVLKVNSLRQQR 293
           H  NL++ + WG  IS   +    + E  D+ +     R  LP   DG+V KVNS+  QR
Sbjct: 246 HIGNLQQLQAWGMPISHELKLAHGIAECLDYYRDIGERRNALPYEIDGVVFKVNSIASQR 305

Query: 294 NLGFTAKSPRWAIAYKFQAEQALTRLNKVTYQVGRTGAVTPVANLDPIQLSGTVVKRASL 353
            LGF A+ PRWAIA+KF A + LT L  V +QVGRTGAVTPVA L P++++G  V  A+L
Sbjct: 306 ELGFRAREPRWAIAHKFPAMEELTELLDVEFQVGRTGAVTPVARLKPVKVAGVTVANATL 365

Query: 354 HNADIIEGLDLHIGDMVYVEKGGEIIPKIVGVDKDARIMIGDKVKFITHCPECGSKLVRY 413
           HN D +  L L IGDMV + + G++IP++V V  + R      V+    CP CGS + R 
Sbjct: 366 HNMDEVARLGLMIGDMVIIRRAGDVIPQVVQVVMERRPENARPVQIPEQCPVCGSHVERT 425

Query: 414 E------------GEAAYYCTNDAACPPQIKGKIEHFISRRAMNIDGLGPETVDQFYQEG 461
           +              A Y C    AC  Q+K  I HF+SRRAM+I+GLG ++V+Q   EG
Sbjct: 426 QLIKRSKGRETVSEGAVYRCVGRLACGAQLKQAIIHFVSRRAMDIEGLGEKSVEQLVDEG 485

Query: 462 LIRDVADLYTLKTSDIINLERMGEKSAENIIKGIEQSKEVPFERVLFALGIRFVGETVAK 521
           L+   ADLY L    I++LE   E S++N++  IE SK     R ++ALGI  VGE  AK
Sbjct: 486 LVSSPADLYALTFEQIVDLEGFAELSSKNLLGAIEDSKRPGLARFIYALGIPDVGEETAK 545

Query: 522 KVAKSFKSMDALADASLDNLIHVDEIGEKIAQSILLYFANPKNRDIIERLRVAGVRLEAD 581
            +A+S  S++ +  A    L ++ ++G ++A  I  +F +  N+ +I  L   G++++  
Sbjct: 546 VLARSLGSLERVQQALPQVLTYLPDVGLEVAHEIHSFFEDEHNQQVIADLLRHGLQIQDQ 605

Query: 582 EE 583
            E
Sbjct: 606 GE 607



 Score = 71.6 bits (174), Expect = 1e-16
 Identities = 62/191 (32%), Positives = 93/191 (48%), Gaps = 5/191 (2%)

Query: 477 IINLERMGEKSAENIIKGIEQSKEVPFERVLFALGIRFVGETVAKKVAKSFKSMDALADA 536
           I +L R G +  +    G E S        L  L I  VG   A+K+A  F S+ A+  A
Sbjct: 592 IADLLRHGLQIQDQGELGAEFSASTTLGGFLDKLHIPLVGPGGAQKLADKFGSLQAVIGA 651

Query: 537 SLDNLIHVDEIGEKIAQSILLYFANPKNRDIIERL--RVAGVRLEADEEDTSEHTDKLAG 594
             D L     + EK A S+  +FA   NR + E    ++A   +    E        LAG
Sbjct: 652 --DWLDMRQALPEKQANSVREFFAVEANRQLAEAAEKQLADFGMHWQSERKVVEGLPLAG 709

Query: 595 KSIVISGVFAHHSRDEYKELIEKHGGKNVGSISSKTSFILAGDNMGPSKLEKAQKLGVTI 654
           ++ V++G     SRD  K+ +E  G K  GS+S+KT  ++AG   G SKL KA +LG+ +
Sbjct: 710 QTWVLTGSLELMSRDIAKDKLESLGAKVAGSVSAKTHCVVAGPGAG-SKLTKANELGLKV 768

Query: 655 VSEEEFLQMIE 665
           + EE F+  ++
Sbjct: 769 LDEEAFVAFLK 779