Pairwise Alignments

Query, 1368 a.a., DNA-directed RNA polymerase subunit beta from Paraburkholderia bryophila 376MFSha3.1

Subject, 1357 a.a., DNA-directed RNA polymerase subunit beta from Pseudomonas simiae WCS417

 Score = 1804 bits (4673), Expect = 0.0
 Identities = 911/1367 (66%), Positives = 1086/1367 (79%), Gaps = 13/1367 (0%)

Query: 1    MQYSFTEKKRIRKSFAKRPIVHQVPFLLATQLESFSTFLQADTSSTQRKPEGLQAAFTSV 60
            M YS+TEKKRIRK F+K P V  VP+LLA QL+S+  FLQA  +  Q +  GL AAF SV
Sbjct: 1    MAYSYTEKKRIRKDFSKLPDVMDVPYLLAIQLDSYREFLQAGATKDQFRDVGLHAAFKSV 60

Query: 61   FPIVSHNGFARLEFVSYMLSPPAFNIKECQQRGLTYCSALRAKVRLVLLDKESPSKPVVK 120
            FPI+S++G A LE+V Y L  PAF++KEC  RG+TY   LR KVRL++ DKES +K  +K
Sbjct: 61   FPIISYSGNAALEYVGYRLGEPAFDVKECVLRGVTYAVPLRVKVRLIIFDKESSNK-AIK 119

Query: 121  EVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSAR 180
            ++KEQEVYMGEIPLMT  G+FVINGTERVIVSQLHRSPGVFF+HD+GKTHSSGKLL+SAR
Sbjct: 120  DIKEQEVYMGEIPLMTENGTFVINGTERVIVSQLHRSPGVFFDHDRGKTHSSGKLLYSAR 179

Query: 181  IIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMPE 240
            IIPYRGSWLDFEFDPKD ++ R+DRRRK+P ++LL+A+G T EQ+L  F+  + F+L  E
Sbjct: 180  IIPYRGSWLDFEFDPKDCVFVRIDRRRKLPASVLLRALGYTTEQVLDAFYTTNVFSLKDE 239

Query: 241  GAQMEFVPERLRGEVARFDITDRDGNVIVQKDKRINAKHIRDLDNAKTKFISVPEDYLLG 300
              ++E +  RLRGE+A  DI D  G VIV+  +RI A+HI  ++ A  K + VP DY+LG
Sbjct: 240  TLKLELIASRLRGEIAVLDIQDEKGKVIVEAGRRITARHINQIEKAGIKELEVPLDYVLG 299

Query: 301  RVLAKNVVDGDTGEVIANANDEITETVLEKLRESKIKDIQTLYTNDLDQGPYISSTLRID 360
            R  AK +V   TGE++A  N E+   +L K+ ++++  I+TLYTND+D GP+IS TL+ID
Sbjct: 300  RTTAKVIVHPATGEILAECNTELNTEILAKIAKAQVVRIETLYTNDIDCGPFISDTLKID 359

Query: 361  ETADKMAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEDAYDLSKVGRMKFNRRVGRDEI 420
             T++++ A + IYRMMRPGEPPT++A E LFN LF+S + YDLS VGRMKFNRR+GR EI
Sbjct: 360  STSNQLEALVEIYRMMRPGEPPTKDAAETLFNNLFFSPERYDLSAVGRMKFNRRIGRTEI 419

Query: 421  VGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERA 480
             G   L  +DI+A +K LV++RNGKG VDDIDHLGNRRVRCVGE+AENQFR GLVRVERA
Sbjct: 420  EGSGVLCKEDIVAVLKTLVDIRNGKGIVDDIDHLGNRRVRCVGEMAENQFRVGLVRVERA 479

Query: 481  VKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALG 540
            VKERL  AESE LMP DLIN+KP+++A++EFFGSSQLSQFMDQ NPLSEITHKRRV ALG
Sbjct: 480  VKERLSMAESEGLMPQDLINAKPVAAAVKEFFGSSQLSQFMDQNNPLSEITHKRRVYALG 539

Query: 541  PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPYRKV 600
            PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLA YA  N+YGFLE+PYR V
Sbjct: 540  PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLAAYARTNQYGFLESPYRVV 599

Query: 601  VDGKVTDQIDYLSAIEEGRYVIAQANAAVAEDGTLTDELVSSREAGETLMVTPDRIQYMD 660
             D  VTD+I +LSAIEE  +VIAQA+A + +   L DELV+ R   E  +  P+ +  MD
Sbjct: 600  KDALVTDEIVFLSAIEEADHVIAQASATMNDKKVLVDELVAVRHLNEFTVKAPEDVTLMD 659

Query: 661  VAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKAVVGTGIERTVAVDSGT 720
            V+P Q+VSVAASLIPFLEHDDANRALMGSNMQRQAVP LR +K +VGTG+ER VA DSG 
Sbjct: 660  VSPKQVVSVAASLIPFLEHDDANRALMGSNMQRQAVPTLRADKPLVGTGMERNVARDSGV 719

Query: 721  TVQAFRGGVVDYVDAGRMVIRVNDDEAVAGDVGVDIYNLIKYTRSNQNTNINQRPIVKVG 780
             V A RGGV+D VDA R+V+RV DDE   G+ GVDIYNL KYTRSNQNT INQRP+V  G
Sbjct: 720  CVVARRGGVIDSVDASRIVVRVADDEVETGEAGVDIYNLTKYTRSNQNTCINQRPLVSKG 779

Query: 781  DIVSRGDVLADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISEKVVADDRYTSIHIE 840
            D V R D++ADG STD+GELALGQNM +AFM WNG+NFEDSI +SE+VV +DR+T+IHI+
Sbjct: 780  DRVQRSDIMADGPSTDMGELALGQNMRIAFMAWNGFNFEDSICLSERVVQEDRFTTIHIQ 839

Query: 841  ELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKGETQ 900
            EL  VARDTKLGPEEIT DI N+ E  L +LDE+GIVY+GAEV AGD+LVGKVTPKGETQ
Sbjct: 840  ELTCVARDTKLGPEEITADIPNVGEAALNKLDEAGIVYVGAEVGAGDILVGKVTPKGETQ 899

Query: 901  LTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDDELK 960
            LTPEEKLLRAIFGEKASDVKDTSLRVP+G  GTVIDVQVFTR+G++RD RA  I   +L 
Sbjct: 900  LTPEEKLLRAIFGEKASDVKDTSLRVPTGTKGTVIDVQVFTRDGVERDARALSIEKTQLD 959

Query: 961  RYRLDLNDQLRIVEGDAFQRLARMLDGKVANGGPKKLAKGTKIEQAYLQDLDHYHWFDIR 1020
              R DLN++ RIVEG  F+RL   L G  A GG   L KG  I    L  L+H  WF +R
Sbjct: 960  EIRKDLNEEFRIVEGATFERLRSALVGHKAEGG-AGLKKGQDITDEILDGLEHGQWFKLR 1018

Query: 1021 LADEEAAAQLEAIKDSIEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKRRLQ 1080
            +A++    QLE  +  I  +R   D  FE+K++KL QGD+L PGVLK+VKVYLA++RR+Q
Sbjct: 1019 MAEDALNEQLEKAQAYIVDRRRLLDDKFEDKKRKLQQGDDLAPGVLKIVKVYLAIRRRIQ 1078

Query: 1081 PGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHLGWAA 1140
            PGDKMAGRHGNKGVVS I+P+EDMP+ A+G P DVVLNPLGVPSRMNVGQ+LE HLG AA
Sbjct: 1079 PGDKMAGRHGNKGVVSVIMPVEDMPHDANGTPVDVVLNPLGVPSRMNVGQILETHLGLAA 1138

Query: 1141 KGLGWRIGEMLQRQAKIAELREFLTKIYNE-SGRAEELDSFTDDEIVELAKNLREGVPFA 1199
            KGLG +I  M++ Q K+A+LR+FL +IYNE  GR EELD+F+D EI++LAKNLR GVP A
Sbjct: 1139 KGLGEKINRMIEEQRKVADLRKFLHEIYNEIGGRNEELDTFSDQEILDLAKNLRGGVPMA 1198

Query: 1200 TPVFDGATEEEMSRALDLAFPDDIAKNLGMTPSKNQVRLYDGRTGEMFERTVTVGYMHYL 1259
            TPVFDGA E E+   L LA   D+       P   Q++L+DGRTG  FER VTVGYM+ L
Sbjct: 1199 TPVFDGAKESEIKAMLKLA---DL-------PESGQMQLFDGRTGNKFERPVTVGYMYML 1248

Query: 1260 KLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTV 1319
            KL+HLVDDKMHARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA+Y LQEMLTV
Sbjct: 1249 KLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEMLTV 1308

Query: 1320 KSDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLD 1366
            KSDDV GRTK+Y+N+V GDH ++ GMPESFNVL+KEIRSLGIDIDL+
Sbjct: 1309 KSDDVNGRTKMYKNIVDGDHRMEPGMPESFNVLIKEIRSLGIDIDLE 1355