Pairwise Alignments

Query, 1368 a.a., DNA-directed RNA polymerase subunit beta from Paraburkholderia bryophila 376MFSha3.1

Subject, 1374 a.a., DNA-directed RNA polymerase beta subunit (EC 2.7.7.6) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score = 2172 bits (5629), Expect = 0.0
 Identities = 1072/1369 (78%), Positives = 1225/1369 (89%), Gaps = 2/1369 (0%)

Query: 2    QYSFTEKKRIRKSFAKRPIVHQVPFLLATQLESFSTFLQADTSSTQRKPEGLQAAFTSVF 61
            +YS+TE+KRIRKSF  R  V  +P+LL  Q ++++ FLQAD++  +R  EGLQAAF + F
Sbjct: 6    KYSYTERKRIRKSFGTRENVLAIPYLLQMQKDAYTAFLQADSAPKKRTAEGLQAAFEAAF 65

Query: 62   PIVSHNGFARLEFVSYMLSPPAFNIKECQQRGLTYCSALRAKVRLVLLDKESPS--KPVV 119
            PIVSHNGF  ++FV Y L+ PAF+++ECQ RGLT+ SA+RA+V+L++ D+ES +    VV
Sbjct: 66   PIVSHNGFVEMKFVEYNLAKPAFDVRECQTRGLTFASAVRARVQLIIYDRESSTAQSKVV 125

Query: 120  KEVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 179
            KEVKEQEVYMGE+PLMT  GSF+INGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA
Sbjct: 126  KEVKEQEVYMGEVPLMTEKGSFIINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSA 185

Query: 180  RIIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMP 239
            RIIPYRGSWLDFEFDPKDVL+FRVDRRRKMPVTILLKAIGLTPE ILANFFV D+F LM 
Sbjct: 186  RIIPYRGSWLDFEFDPKDVLFFRVDRRRKMPVTILLKAIGLTPEAILANFFVNDHFRLMD 245

Query: 240  EGAQMEFVPERLRGEVARFDITDRDGNVIVQKDKRINAKHIRDLDNAKTKFISVPEDYLL 299
             GAQM FVPERLRGEVARFDITD+ G V+V KDKRI A+H R+L+ + T  ISVPED+++
Sbjct: 246  SGAQMAFVPERLRGEVARFDITDKSGKVVVAKDKRITARHTRELEQSGTSHISVPEDFMI 305

Query: 300  GRVLAKNVVDGDTGEVIANANDEITETVLEKLRESKIKDIQTLYTNDLDQGPYISSTLRI 359
            GRV+A+N+VD DTGE+IA AN+E+TE +L+KLR + ++D+Q LYTN+LDQG YIS TLRI
Sbjct: 306  GRVVARNIVDTDTGEIIAKANEELTEALLKKLRTAGVQDLQCLYTNELDQGAYISQTLRI 365

Query: 360  DETADKMAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEDAYDLSKVGRMKFNRRVGRDE 419
            DETAD+ AAR+AIYRMMRPGEPPTE+AV+ALF+RLFY+ D YDLS+VGRMKFN RVGRDE
Sbjct: 366  DETADEFAARVAIYRMMRPGEPPTEDAVQALFHRLFYNPDTYDLSRVGRMKFNARVGRDE 425

Query: 420  IVGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVER 479
              GPM L +DDILA +KILV+LRNG+GEVDDIDHLGNRRVRCVGELAENQ+R GL R+E+
Sbjct: 426  STGPMVLSNDDILAVVKILVDLRNGRGEVDDIDHLGNRRVRCVGELAENQYRTGLARIEK 485

Query: 480  AVKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVSAL 539
            AVKERLGQAE E LMPHDLINSKPIS+A++EFFG+SQLSQFMDQTNPL+EITHKRRVSAL
Sbjct: 486  AVKERLGQAEQEPLMPHDLINSKPISAALKEFFGASQLSQFMDQTNPLAEITHKRRVSAL 545

Query: 540  GPGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPYRK 599
            GPGGLTRERAGFEVRDVH THYGRVCPIETPEGPNIGLINSLALYA LNEYGF+ETPYR+
Sbjct: 546  GPGGLTRERAGFEVRDVHVTHYGRVCPIETPEGPNIGLINSLALYARLNEYGFIETPYRR 605

Query: 600  VVDGKVTDQIDYLSAIEEGRYVIAQANAAVAEDGTLTDELVSSREAGETLMVTPDRIQYM 659
            V DGKVT+QIDYLSAIEEG+YVIAQANAA+  +G LT +L+S+RE GE+++   D IQYM
Sbjct: 606  VSDGKVTNQIDYLSAIEEGKYVIAQANAALDAEGRLTGDLISAREKGESILTPADTIQYM 665

Query: 660  DVAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKAVVGTGIERTVAVDSG 719
            DV+P+QIVSVAASL+PFLEHDDANRALMG+NM RQAVP LRPEK +VGTGIER  A+DSG
Sbjct: 666  DVSPAQIVSVAASLVPFLEHDDANRALMGANMSRQAVPVLRPEKPLVGTGIERVAAIDSG 725

Query: 720  TTVQAFRGGVVDYVDAGRMVIRVNDDEAVAGDVGVDIYNLIKYTRSNQNTNINQRPIVKV 779
            T V A RGGVVDYVDA R+VIRVND EAVAG+VGVDIYNLIKY RSNQNTNI+QRPIVK 
Sbjct: 726  TVVTAKRGGVVDYVDATRIVIRVNDVEAVAGEVGVDIYNLIKYQRSNQNTNIHQRPIVKK 785

Query: 780  GDIVSRGDVLADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISEKVVADDRYTSIHI 839
            GD +++GDV+ADGASTDLGE+++GQNML+AFMPWNGYNFEDSILISE+VVADDRYTSIHI
Sbjct: 786  GDKLAKGDVIADGASTDLGEISIGQNMLIAFMPWNGYNFEDSILISERVVADDRYTSIHI 845

Query: 840  EELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKGET 899
            EEL V+ARDTKLG EEITRDI NLAE QL RLD+SGI+Y+GAEV  GDVLVGKVTPKGET
Sbjct: 846  EELVVMARDTKLGAEEITRDIPNLAEQQLNRLDDSGIIYVGAEVLPGDVLVGKVTPKGET 905

Query: 900  QLTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDDEL 959
             LTPEEKLLRAIFGEKASDVKDTSLRV  G  GTVIDVQVFTREGI RDKRAQQIIDDEL
Sbjct: 906  TLTPEEKLLRAIFGEKASDVKDTSLRVDQGSQGTVIDVQVFTREGITRDKRAQQIIDDEL 965

Query: 960  KRYRLDLNDQLRIVEGDAFQRLARMLDGKVANGGPKKLAKGTKIEQAYLQDLDHYHWFDI 1019
            KR+RLDLNDQLRIVE DAF R+ ++L GKVANGGPKKL+KGT I++AYL D++ YHWFDI
Sbjct: 966  KRFRLDLNDQLRIVEADAFDRIEKLLVGKVANGGPKKLSKGTTIDKAYLDDVEKYHWFDI 1025

Query: 1020 RLADEEAAAQLEAIKDSIEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKRRL 1079
            R ADE  AAQLE+IK+S+EQ RH FDLAFEEKRKKLTQGDELP GVLKMVKVYLAVKRRL
Sbjct: 1026 RPADETVAAQLESIKNSMEQTRHSFDLAFEEKRKKLTQGDELPAGVLKMVKVYLAVKRRL 1085

Query: 1080 QPGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHLGWA 1139
            QPGDKMAGRHGNKGVVSKIVP+EDMP+MADG PAD+VLNPLGVPSRMNVGQVLEVHLGWA
Sbjct: 1086 QPGDKMAGRHGNKGVVSKIVPVEDMPHMADGTPADIVLNPLGVPSRMNVGQVLEVHLGWA 1145

Query: 1140 AKGLGWRIGEMLQRQAKIAELREFLTKIYNESGRAEELDSFTDDEIVELAKNLREGVPFA 1199
            AKGLG RIG+MLQ +AK+AELR+FL  +YN++G+ E L   +D E++E+A+NL+ GVPFA
Sbjct: 1146 AKGLGQRIGDMLQAEAKVAELRKFLETVYNQAGKKETLADLSDAEVLEMAENLQTGVPFA 1205

Query: 1200 TPVFDGATEEEMSRALDLAFPDDIAKNLGMTPSKNQVRLYDGRTGEMFERTVTVGYMHYL 1259
            TPVFDGA+E+E+   L LA+PDDIA+  G+T ++ Q +LYDGRTG+ FER  TVGYMH+L
Sbjct: 1206 TPVFDGASEDEIRAMLKLAYPDDIAQLKGLTETRTQAQLYDGRTGDAFERKTTVGYMHFL 1265

Query: 1260 KLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEMLTV 1319
            KLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASY+LQEMLTV
Sbjct: 1266 KLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYILQEMLTV 1325

Query: 1320 KSDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLDRN 1368
            KSDDV GRTKVYE++VKG+H IDAGMPESFNVLVKEIRSLGIDI+L+R+
Sbjct: 1326 KSDDVQGRTKVYESIVKGEHTIDAGMPESFNVLVKEIRSLGIDIELERS 1374