Pairwise Alignments

Query, 1368 a.a., DNA-directed RNA polymerase subunit beta from Paraburkholderia bryophila 376MFSha3.1

Subject, 1291 a.a., DNA-directed RNA polymerase, beta subunit from Echinicola vietnamensis KMM 6221, DSM 17526

 Score = 1128 bits (2918), Expect = 0.0
 Identities = 634/1390 (45%), Positives = 865/1390 (62%), Gaps = 142/1390 (10%)

Query: 12   RKSFAKRPIVHQVPFLLATQLESFSTFLQADTSSTQRKPEGLQAAFTSVFPIVSHNGFAR 71
            RKSF+   +V   P  L  QL+SF  F Q DT + +R+ +GL   F+  FPI        
Sbjct: 9    RKSFSSIKVVKDYPDFLDIQLQSFKDFFQLDTPAEKRRQDGLFKVFSENFPISDSRENFT 68

Query: 72   LEFVSYMLSPPAFNIKECQQRGLTYCSALRAKVRLVLLDKESPSKPVVKEVKEQEVYMGE 131
            LEF+ Y + PP +++ EC  RGLTY   L+AK+RL+  D+++     +    EQEV++G 
Sbjct: 69   LEFIDYTVDPPKYSVGECIDRGLTYSVPLKAKLRLLCSDEDNEDFETI----EQEVFLGN 124

Query: 132  IPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSARIIPYRGSWLDF 191
            +P MT  GSFVING ERVIVSQLHRSPGVFF   K   H++G  L+SARIIP++GSW++F
Sbjct: 125  LPYMTEKGSFVINGAERVIVSQLHRSPGVFFAQSK---HTNGTKLYSARIIPFKGSWIEF 181

Query: 192  EFDPKDVLYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMPEGAQMEFVPERL 251
              D  +V+Y  +DR++K PVT LL+AIG   ++ + + F         +    + V  +L
Sbjct: 182  ATDINNVMYAYIDRKKKFPVTTLLRAIGYGSDKAILDLFGLSEEIEANKSNLKKIVGRKL 241

Query: 252  RGEVARFDITDRDGNVIVQKDKRINAKHIRDLDNAKTKFISVPEDYLLGRVLAKNVVDGD 311
               V +  + D                              V ED          VV  D
Sbjct: 242  AARVLKTWVED-----------------------------FVDED-------TGEVVSID 265

Query: 312  TGEVIANANDEITETVLEKLRESKIKDIQTLYTNDLDQGPY--ISSTLRIDETADKMAAR 369
              EV+   +  +T+  +E + +S  K +  L+ +D++   Y  I +TL+ D +  +  A 
Sbjct: 266  RNEVLLERDSVLTDEDIELILDSGAKSV-ILHRDDVNIADYSIIYNTLQKDNSNSEKEAV 324

Query: 370  IAIYRMMRPGEPPTEEAVEALFNRLFYSEDAYDLSKVGRMKFNRRVGRDEIVGPMTLQDD 429
              IYR +R  E P E     + + LF+S+  YDL +VGR + N+++G D     + L  +
Sbjct: 325  EVIYRQLRNTEAPDEATAREVIHGLFFSDKRYDLGEVGRYRINKKLGLDIEAEKIVLTTE 384

Query: 430  DILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERAVKERLGQAE 489
            DI+  +K L+ L N K  VDDIDHL NRRVR VGE   +QF  GL R+ R ++ER+   +
Sbjct: 385  DIINIVKYLIGLINSKAVVDDIDHLSNRRVRTVGEQLYSQFGVGLARMARTIRERMNVRD 444

Query: 490  SENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALGPGGLTRERA 549
            +E+  P DLIN++ +SS I  FFG++QLSQFMDQTNPL+E+THKRR+SALGPGGL+RERA
Sbjct: 445  NEDFKPVDLINARTLSSVINSFFGTNQLSQFMDQTNPLAELTHKRRLSALGPGGLSRERA 504

Query: 550  GFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPYRKVVDGKV---T 606
            GFEVRDVH THYGR+C IETPEGPNIGLI+SL ++A +N  GFLETPYRKV +GK     
Sbjct: 505  GFEVRDVHYTHYGRLCTIETPEGPNIGLISSLCVHAKVNAMGFLETPYRKVKEGKAGMEA 564

Query: 607  DQIDYLSAIEEGRYVIAQANAAVAEDGTLTDELVSSREAGETLMVTPDRIQYMDVAPSQI 666
            + I +L+A EE    IAQANA +  DG+  ++ V +R  G+  ++ P  I YMDVAP+QI
Sbjct: 565  EDIVFLTAEEEDNNNIAQANAPLETDGSFVNDRVKARYEGDFPVLEPKEISYMDVAPNQI 624

Query: 667  VSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKAVVGTGIERTVAVDSGTTVQAFR 726
            VSVAASLIPFLEHDDANRALMGSNMQRQAVP L+ E  +VGTG+E   AVDS + + A  
Sbjct: 625  VSVAASLIPFLEHDDANRALMGSNMQRQAVPLLKAESPIVGTGLEAKAAVDSRSLIIAEA 684

Query: 727  GGVVDYVDAGRMVIR--VNDDEAVAG-DVGVDIYNLIKYTRSNQNTNINQRPIVKVGDIV 783
             GVVD+VDA ++VI+  ++DDE +         Y+LIK+ R+NQ+T IN  P+V  G  V
Sbjct: 685  DGVVDFVDAKKIVIKYDLSDDELLVNFSDEYKSYDLIKFRRTNQDTTINLTPLVLKGQRV 744

Query: 784  SRGDVLADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISEKVVADDRYTSIHIEELN 843
            ++G VL +G ST+ GELALG+N+ VA+MPW GYNFED+I+ISE+VV +D +TSIH+EE  
Sbjct: 745  TKGQVLVEGYSTNQGELALGKNLKVAYMPWQGYNFEDAIVISERVVREDIFTSIHVEEFQ 804

Query: 844  VVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKGETQLTP 903
            +  RDTK G EE+T +I N++E  +  LDE+GI+ IGAE++ GD+++GK+TPKGET  TP
Sbjct: 805  LEVRDTKRGEEELTSEIPNVSEEAVKNLDENGIIRIGAELKEGDIIIGKITPKGETDPTP 864

Query: 904  EEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDDELKRYR 963
            EEKLLRAIFG+KA DVKD SL+    ++G VI+ ++F+R   ++DK  +     E+++ +
Sbjct: 865  EEKLLRAIFGDKAGDVKDASLKASPSLNGVVIETKLFSRP--KKDKELRAKAKAEVEKLK 922

Query: 964  LDLNDQLRIVEGDAFQRLARMLDGKVANG-----GPKKLAKGTKIEQAYLQ--------- 1009
                 +L  V      +L  +LDG  + G     G + ++KG K     ++         
Sbjct: 923  QAYTKELLGVRAKMINKLVSILDGMTSLGVKHKFGDEIISKGVKFNHQNIENNLFPAKNP 982

Query: 1010 --DLDHYH-----------WFDIRLADEEAAAQLEAIKDSIEQKRHQFDLAFEEKRKKLT 1056
              D  +Y+             D    DE A + ++ +  +    R++    F+  R  L 
Sbjct: 983  YRDESNYNVPEEANLISDIILDDWTEDEHANSLIQQLVKNYTNTRNEISGRFKRDRFTLE 1042

Query: 1057 QGDELPPGVLKMVKVYLAVKRRLQPGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVV 1116
             GDELP G++++ KVY+A KR+L+ GDKMAGRHGNKG+V+KIV  EDMP++ DG P D+V
Sbjct: 1043 VGDELPAGIVRLAKVYVAKKRKLKVGDKMAGRHGNKGIVAKIVRDEDMPFLEDGTPMDIV 1102

Query: 1117 LNPLGVPSRMNVGQVLEVHLGWAAKGLGWRIGEMLQRQAKIAELREFLTKIYNESGRAEE 1176
            LNPLGVPSRMN+GQ+ E  L WA        GE + ++                      
Sbjct: 1103 LNPLGVPSRMNIGQIFETVLAWA--------GEKMNKK---------------------- 1132

Query: 1177 LDSFTDDEIVELAKNLREGVPFATPVFDGATEEEMSRALDLAFPDDIAKNLGMTPSKNQV 1236
                                 +ATP+FDGA+ EE++  LD A         G+ PS  + 
Sbjct: 1133 ---------------------YATPIFDGASTEEVAAELDAA---------GL-PSFGRT 1161

Query: 1237 RLYDGRTGEMFERTVTVGYMHYLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRF 1296
             L+DG TG+ F++ VTVG  + LKL HLVDDKMHARS GPYSL+TQQPLGGKAQFGGQRF
Sbjct: 1162 YLFDGLTGKQFDQPVTVGIAYMLKLGHLVDDKMHARSIGPYSLITQQPLGGKAQFGGQRF 1221

Query: 1297 GEMEVWALEAYGASYVLQEMLTVKSDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEI 1356
            GEMEVWALEA+GAS+VLQE+LTVKSDDV GR K YE++VKG+++    +PESFNVLV E+
Sbjct: 1222 GEMEVWALEAFGASHVLQEILTVKSDDVIGRAKAYESIVKGENLPKPNIPESFNVLVHEL 1281

Query: 1357 RSLGIDIDLD 1366
            R L ++I LD
Sbjct: 1282 RGLALEITLD 1291