Pairwise Alignments

Query, 1368 a.a., DNA-directed RNA polymerase subunit beta from Paraburkholderia bryophila 376MFSha3.1

Subject, 1342 a.a., RNA polymerase, beta subunit from Escherichia coli BL21

 Score = 1785 bits (4623), Expect = 0.0
 Identities = 900/1369 (65%), Positives = 1093/1369 (79%), Gaps = 32/1369 (2%)

Query: 1    MQYSFTEKKRIRKSFAKRPIVHQVPFLLATQLESFSTFLQADTSSTQRKPEGLQAAFTSV 60
            M YS+TEKKRIRK F KRP V  VP+LL+ QL+SF  F++ D         GL+AAF SV
Sbjct: 1    MVYSYTEKKRIRKDFGKRPQVLDVPYLLSIQLDSFQKFIEQDPEGQY----GLEAAFRSV 56

Query: 61   FPIVSHNGFARLEFVSYMLSPPAFNIKECQQRGLTYCSALRAKVRLVLLDKESPSKPVVK 120
            FPI S++G + L++VSY L  P F+++ECQ RG+TY + LR K+RLV+ ++E+P +  VK
Sbjct: 57   FPIQSYSGNSELQYVSYRLGEPVFDVQECQIRGVTYSAPLRVKLRLVIYEREAP-EGTVK 115

Query: 121  EVKEQEVYMGEIPLMTPTGSFVINGTERVIVSQLHRSPGVFFEHDKGKTHSSGKLLFSAR 180
            ++KEQEVYMGEIPLMT  G+FVINGTERVIVSQLHRSPGVFF+ DKGKTHSSGK+L++AR
Sbjct: 116  DIKEQEVYMGEIPLMTDNGTFVINGTERVIVSQLHRSPGVFFDSDKGKTHSSGKVLYNAR 175

Query: 181  IIPYRGSWLDFEFDPKDVLYFRVDRRRKMPVTILLKAIGLTPEQILANFFVFDNFTLMPE 240
            IIPYRGSWLDFEFDPKD L+ R+DRRRK+P TI+L+A+  T EQIL  FF    F +   
Sbjct: 176  IIPYRGSWLDFEFDPKDNLFVRIDRRRKLPATIILRALNYTTEQILDLFFEKVIFEIRDN 235

Query: 241  GAQMEFVPERLRGEVARFDITDRDGNVIVQKDKRINAKHIRDLDNAKTKFISVPEDYLLG 300
              QME VPERLRGE A FDI + +G V V+K +RI A+HIR L+    K I VP +Y+ G
Sbjct: 236  KLQMELVPERLRGETASFDI-EANGKVYVEKGRRITARHIRQLEKDDVKLIEVPVEYIAG 294

Query: 301  RVLAKNVVDGDTGEVIANANDEITETVLEKLRESKIKDIQTLYTNDLDQGPYISSTLRID 360
            +V+AK+ +D  TGE+I  AN E++  +L KL +S  K I+TL+TNDLD GPYIS TLR+D
Sbjct: 295  KVVAKDYIDESTGELICAANMELSLDLLAKLSQSGHKRIETLFTNDLDHGPYISETLRVD 354

Query: 361  ETADKMAARIAIYRMMRPGEPPTEEAVEALFNRLFYSEDAYDLSKVGRMKFNRRVGRDEI 420
             T D+++A + IYRMMRPGEPPT EA E+LF  LF+SED YDLS VGRMKFNR + R+EI
Sbjct: 355  PTNDRLSALVEIYRMMRPGEPPTREAAESLFENLFFSEDRYDLSAVGRMKFNRSLLREEI 414

Query: 421  VGPMTLQDDDILATIKILVELRNGKGEVDDIDHLGNRRVRCVGELAENQFRAGLVRVERA 480
             G   L  DDI+  +K L+++RNGKGEVDDIDHLGNRR+R VGE+AENQFR GLVRVERA
Sbjct: 415  EGSGILSKDDIIDVMKKLIDIRNGKGEVDDIDHLGNRRIRSVGEMAENQFRVGLVRVERA 474

Query: 481  VKERLGQAESENLMPHDLINSKPISSAIREFFGSSQLSQFMDQTNPLSEITHKRRVSALG 540
            VKERL   + + LMP D+IN+KPIS+A++EFFGSSQLSQFMDQ NPLSEITHKRR+SALG
Sbjct: 475  VKERLSLGDLDTLMPQDMINAKPISAAVKEFFGSSQLSQFMDQNNPLSEITHKRRISALG 534

Query: 541  PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLALYAHLNEYGFLETPYRKV 600
            PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSL++YA  NEYGFLETPYRKV
Sbjct: 535  PGGLTRERAGFEVRDVHPTHYGRVCPIETPEGPNIGLINSLSVYAQTNEYGFLETPYRKV 594

Query: 601  VDGKVTDQIDYLSAIEEGRYVIAQANAAVAEDGTLTDELVSSREAGETLMVTPDRIQYMD 660
             DG VTD+I YLSAIEEG YVIAQAN+ + E+G   ++LV+ R  GE+ + + D++ YMD
Sbjct: 595  TDGVVTDEIHYLSAIEEGNYVIAQANSNLDEEGHFVEDLVTCRSKGESSLFSRDQVDYMD 654

Query: 661  VAPSQIVSVAASLIPFLEHDDANRALMGSNMQRQAVPCLRPEKAVVGTGIERTVAVDSGT 720
            V+  Q+VSV ASLIPFLEHDDANRALMG+NMQRQAVP LR +K +VGTG+ER VAVDSG 
Sbjct: 655  VSTQQVVSVGASLIPFLEHDDANRALMGANMQRQAVPTLRADKPLVGTGMERAVAVDSGV 714

Query: 721  TVQAFRGGVVDYVDAGRMVIRVNDDEAVAGDVGVDIYNLIKYTRSNQNTNINQRPIVKVG 780
            T  A RGGVV YVDA R+VI+VN+DE   G+ G+DIYNL KYTRSNQNT INQ P V +G
Sbjct: 715  TAVAKRGGVVQYVDASRIVIKVNEDEMYPGEAGIDIYNLTKYTRSNQNTCINQMPCVSLG 774

Query: 781  DIVSRGDVLADGASTDLGELALGQNMLVAFMPWNGYNFEDSILISEKVVADDRYTSIHIE 840
            + V RGDVLADG STDLGELALGQNM VAFMPWNGYNFEDSIL+SE+VV +DR+T+IHI+
Sbjct: 775  EPVERGDVLADGPSTDLGELALGQNMRVAFMPWNGYNFEDSILVSERVVQEDRFTTIHIQ 834

Query: 841  ELNVVARDTKLGPEEITRDISNLAEVQLGRLDESGIVYIGAEVEAGDVLVGKVTPKGETQ 900
            EL  V+RDTKLGPEEIT DI N+ E  L +LDESGIVYIGAEV  GD+LVGKVTPKGETQ
Sbjct: 835  ELACVSRDTKLGPEEITADIPNVGEAALSKLDESGIVYIGAEVTGGDILVGKVTPKGETQ 894

Query: 901  LTPEEKLLRAIFGEKASDVKDTSLRVPSGMSGTVIDVQVFTREGIQRDKRAQQIIDDELK 960
            LTPEEKLLRAIFGEKASDVKD+SLRVP+G+SGTVIDVQVFTR+G+++DKRA +I + +LK
Sbjct: 895  LTPEEKLLRAIFGEKASDVKDSSLRVPNGVSGTVIDVQVFTRDGVEKDKRALEIEEMQLK 954

Query: 961  RYRLDLNDQLRIVEGDAFQRLARMLDGKVANGGPKKLAKGTKIEQAYLQDLDHYHWFDIR 1020
            + + DL+++L+I+E   F R+  +L   VA G          +E   L  L    W ++ 
Sbjct: 955  QAKKDLSEELQILEAGLFSRIRAVL---VAGG----------VEAEKLDKLPRDRWLELG 1001

Query: 1021 LADEEAAAQLEAIKDSIEQKRHQFDLAFEEKRKKLTQGDELPPGVLKMVKVYLAVKRRLQ 1080
            L DEE   QLE + +  ++ +H+F+   E KR+K+TQGD+L PGVLK+VKVYLAVKRR+Q
Sbjct: 1002 LTDEEKQNQLEQLAEQYDELKHEFEKKLEAKRRKITQGDDLAPGVLKIVKVYLAVKRRIQ 1061

Query: 1081 PGDKMAGRHGNKGVVSKIVPIEDMPYMADGRPADVVLNPLGVPSRMNVGQVLEVHLGWAA 1140
            PGDKMAGRHGNKGV+SKI PIEDMPY  +G P D+VLNPLGVPSRMN+GQ+LE HLG AA
Sbjct: 1062 PGDKMAGRHGNKGVISKINPIEDMPYDENGTPVDIVLNPLGVPSRMNIGQILETHLGMAA 1121

Query: 1141 KGLGWRIGEMLQRQAKIAELREFLTKIYN---ESGRAEELDSFTDDEIVELAKNLREGVP 1197
            KG+G +I  ML++Q ++A+LREF+ + Y+   +  +  +L +F+D+E++ LA+NLR+G+P
Sbjct: 1122 KGIGDKINAMLKQQQEVAKLREFIQRAYDLGADVRQKVDLSTFSDEEVMRLAENLRKGMP 1181

Query: 1198 FATPVFDGATEEEMSRALDLAFPDDIAKNLGMTPSKNQVRLYDGRTGEMFERTVTVGYMH 1257
             ATPVFDGA E E+   L           LG  P+  Q+RLYDGRTGE FER VTVGYM+
Sbjct: 1182 IATPVFDGAKEAEIKELL----------KLGDLPTSGQIRLYDGRTGEQFERPVTVGYMY 1231

Query: 1258 YLKLHHLVDDKMHARSTGPYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGASYVLQEML 1317
             LKL+HLVDDKMHARSTG YSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGA+Y LQEML
Sbjct: 1232 MLKLNHLVDDKMHARSTGSYSLVTQQPLGGKAQFGGQRFGEMEVWALEAYGAAYTLQEML 1291

Query: 1318 TVKSDDVTGRTKVYENLVKGDHVIDAGMPESFNVLVKEIRSLGIDIDLD 1366
            TVKSDDV GRTK+Y+N+V G+H ++ GMPESFNVL+KEIRSLGI+I+L+
Sbjct: 1292 TVKSDDVNGRTKMYKNIVDGNHQMEPGMPESFNVLLKEIRSLGINIELE 1340