Pairwise Alignments

Query, 787 a.a., ATP-dependent DNA helicase UvrD from Paraburkholderia bryophila 376MFSha3.1

Subject, 728 a.a., DNA-dependent ATPase I and helicase II, nucleotide Excision Repair Complex from Pseudomonas putida KT2440

 Score =  641 bits (1654), Expect = 0.0
 Identities = 375/792 (47%), Positives = 487/792 (61%), Gaps = 81/792 (10%)

Query: 4   LLANLNPEQHAAVTLPNEPALILAGAGSGKTRVLITRIAWLIQHGLASPATILAVTFTNK 63
           LL +LN  Q  AV       L+LAGAGSGKTRVL+ RIAWLIQ   ASP +IL+VTFTNK
Sbjct: 9   LLNSLNDAQRQAVAATLGRQLVLAGAGSGKTRVLVHRIAWLIQVEQASPHSILSVTFTNK 68

Query: 64  AAREMMSRLSALLPIDTRGMWIGTFHGLCNRMLRAHHRDAGLPATFQILDTADQLSAIKR 123
           AA EM  R+  LL I+  GMW+GTFHGL +R+LRAH ++A L   FQILD+ DQ   IKR
Sbjct: 69  AAAEMRQRIEQLLGINPAGMWVGTFHGLAHRLLRAHWQEARLVQNFQILDSDDQQRLIKR 128

Query: 124 LMKGLNIDDEKYPAKNLQYFINNAKEQGLRPKDVDAT-DNFNRKFVELYEAYDQQCQREG 182
           +M+ L +D++K+PA+  Q+FIN  K++GLRP+ + A  D F     E+Y AY+Q C+R G
Sbjct: 129 VMRELGLDEQKWPARQAQWFINGQKDEGLRPQHIQAGGDLFLATMREVYTAYEQACERAG 188

Query: 183 VVDFPELLLRCYELLAHNPPLRAHYQARFKHILVDEFQDTNKLQYAWLKLLAGQTNSIFA 242
           V+DF ELLLR  +L   +P L  HYQ RF+H+LVDEFQDTN +QYAWL+LLA   +S+ A
Sbjct: 189 VIDFSELLLRALDLWRDHPGLLEHYQRRFRHVLVDEFQDTNAVQYAWLRLLARGGDSLMA 248

Query: 243 VGDDDQSIYAFRGANVGNMRDFEHEFNVRHLIKLEQNYRSHGHILDAANQLIANNSRRLG 302
           VGDDDQSIY +RGA + N+  +  +F    +I+LEQNYRS G IL AAN LIANNS RLG
Sbjct: 249 VGDDDQSIYGWRGAKIENIHQYTADFPDAEMIRLEQNYRSTGGILKAANALIANNSGRLG 308

Query: 303 KNLRTDAGHGEPVRVYESATDSQEAGWIVEEIKALISTGTSRSEIAILYRSNAQSRTIEH 362
           K L TD G GEP+ +Y +  +  EA ++VE I++L+  G +R+EIAILYRSNAQSR +E 
Sbjct: 309 KELWTDMGEGEPLTLYAAYNEHDEARYVVETIESLVKQGNARNEIAILYRSNAQSRVLEE 368

Query: 363 TLVNAGIAYRVYGGLRFFERQEVKHALAYLRLIDNPNDDTAFARVVNFPTRGIGARSIEQ 422
            L+   I YR+YGG RFFER E+K+A+AYLRLI+   +D A  RV+N P RGIG +++E 
Sbjct: 369 ALLRERIPYRIYGGQRFFERAEIKNAMAYLRLIEGRGNDAALERVINVPPRGIGEKTVEA 428

Query: 423 LADAARLYNCSM------AAAIPYVAGKAGSSLASFANLIGKMRAETQQMSLPETVEYVV 476
           + + AR    SM        A   + G+A S+L +F  LI  + A+   M L    +  +
Sbjct: 429 IREHARHSQLSMWEAMCQLIAAKALKGRAASALGAFIELIEGLAAKVVDMPLHTMTQTTI 488

Query: 477 RASGLADFYQNER--EGQDRLENLQELVNAAAAFVSEEGYGMDTPARSIPLRPGATAAPE 534
             SGL  ++Q E+  +GQ R+ENL+ELV+AA  F S                        
Sbjct: 489 EQSGLITYHQEEKGEKGQARVENLEELVSAARNFES------------------------ 524

Query: 535 LAVATDDPNTVVLDAPGIADPAQNPDTMTPLAGFLSHASLEAGDNQAQAGQEAVQLMTVH 594
               TD+      DA            ++PL+ FL HASLEAGD QA   ++++QLMT+H
Sbjct: 525 ----TDE------DA-----------DLSPLSAFLGHASLEAGDTQADEHEDSIQLMTLH 563

Query: 595 AAKGLEFTAVFITGLEEGLFPHENSAMESDGLEEERRLMYVAITRAKERLYLSFAQSRML 654
           +AKGLEF  VF+ G+EEGLFPH+ S  E   LEEERRL YV ITRA  +L +++A++R L
Sbjct: 564 SAKGLEFPYVFLVGMEEGLFPHKMSLEEPGRLEEERRLAYVGITRAMRQLVMTYAETRRL 623

Query: 655 HGQTRYNIRSRFFDELPQETLKWLTPKVEAGARWGGRSDNAGYGRDWFARPDRQQGYGGG 714
           +G   YN  SRF  E+P            AG     R  N+       +RP       GG
Sbjct: 624 YGSETYNKVSRFVREIP------------AGLVQEVRLSNS------VSRP------FGG 659

Query: 715 ASTAAAPLPAFANEQRAAEAGFRVGQQVFHTKFGEGTITALEGGGADAKAQVKFKRHGEK 774
           A TA      FAN     +  F +GQ+V H  FGEG I   EG GA A+ QV F   G K
Sbjct: 660 AKTATNS-NLFANAS-IPQTAFNLGQRVQHAVFGEGVILNFEGSGAQARVQVNF-AEGSK 716

Query: 775 WLALAVAKLQAV 786
           WL L  AKL+AV
Sbjct: 717 WLMLGYAKLEAV 728