Pairwise Alignments

Query, 1544 a.a., ATP dependent helicase, Lhr family from Paraburkholderia bryophila 376MFSha3.1

Subject, 448 a.a., RNA helicase from Pseudomonas simiae WCS417

 Score = 76.3 bits (186), Expect = 7e-18
 Identities = 91/363 (25%), Positives = 152/363 (41%), Gaps = 57/363 (15%)

Query: 61  FPAPTDAQAAAWPQIRQGRSTLVAAPTGSGKTLTAFLSALDDLVQQGLANNGALPDETLV 120
           F  PT  QAAA P   +GR   V A TGSGKT    L  L+ L+                
Sbjct: 20  FVEPTPVQAAAIPLALEGRDLRVTAQTGSGKTAAFVLPVLNRLI---------------- 63

Query: 121 VYVSPLKALSNDIRLNLQVPLQGIAAELDARGLPPLD-------IRTAVRTGDTTQQERN 173
               P K     +R++++  +     EL  + L  ++       I++ + TG    + + 
Sbjct: 64  ---GPAK-----VRVSIKTLILLPTRELAQQTLKEVERFSQFTFIKSGIITGGEDFKVQA 115

Query: 174 ALKKRAPHILVSTPESLYVLLGSDSGRRMLCTVRTVIVDEIHALAGSKRGSHLALSLERL 233
           A+ ++ P IL+ TP  +   L  ++G   L  V  +++DE    A        A  ++RL
Sbjct: 116 AMLRKVPDILIGTPGRMIEQL--NAGNLDLKEVEVLVLDE----ADRMLDMGFADDVQRL 169

Query: 234 DALCGRRLPRIGLSATQKPVSA---VARFLVGGAPVDSDIPADCAIIDVGHIRERDLALE 290
            + C  R   +  SAT    +    VA+ L     +  +  +D        I   D  + 
Sbjct: 170 VSECVNRQQTMLFSATTGGSTLREMVAKVLNNPEHLQVNNVSDLNATTRQQIVTADHNVH 229

Query: 291 IPPVPLEAVMPNEVWERVYDRLAELVALHSTTLIFVNTRRMAERAARHLTERLGKDAVAA 350
              + L  ++ NE +++               ++F NTR  A+R    L  +  K  V  
Sbjct: 230 KEQI-LNWLLANETYQKA--------------IVFTNTRAAADRIYGRLVAQEYKAFVL- 273

Query: 351 HHGSLAKEHRFDAEQRLKRGELRVLIATASLELGIDIGDVDLVCQMGSPRAIAPFLQRVG 410
            HG   ++ R  A  RLK G +++L+AT     G+D+  +DLV     PR+   ++ R+G
Sbjct: 274 -HGEKDQKDRKLAIDRLKAGGVKILVATDVAARGLDVDGLDLVINFDMPRSGDEYVHRIG 332

Query: 411 RSG 413
           R+G
Sbjct: 333 RTG 335