Pairwise Alignments

Query, 1544 a.a., ATP dependent helicase, Lhr family from Paraburkholderia bryophila 376MFSha3.1

Subject, 440 a.a., ATP-dependent DEAD-box RNA helicase require for 50S ribosomal subunit biogenesis from Pseudomonas putida KT2440

 Score = 90.9 bits (224), Expect = 3e-22
 Identities = 99/360 (27%), Positives = 155/360 (43%), Gaps = 43/360 (11%)

Query: 61  FPAPTDAQAAAWPQIRQGRSTLVAAPTGSGKTLTAFLSALDDLVQQGLANNGALPDETLV 120
           F  PT  QAAA P   QGR   V A TGSGKT    L  L+ LV            E   
Sbjct: 20  FVEPTPVQAAAIPLALQGRDLRVTAQTGSGKTAAFVLPLLNRLVDLSGPRV-----EIRA 74

Query: 121 VYVSPLKALSNDIRLNLQVPLQGIAAELDARGLPPLDIRTAVRTGDTTQQERNALKKRAP 180
           + + P + L+      +Q+  Q               I++ + TG    +E+ A+ ++ P
Sbjct: 75  LILLPTRELAQQTLKQVQLFSQFTY------------IKSGLVTGGEDFKEQAAMLRKVP 122

Query: 181 HILVSTPESLYVLLGSDSGRRMLCTVRTVIVDEIHALAGSKRGSHLALSLERLDALCGRR 240
            +L+ TP  L   L  ++G   L  V+ +I+DE    A        A  +ERL   C  R
Sbjct: 123 DVLIGTPGRLLEQL--NAGNLDLSHVQVLILDE----ADRMLDMGFAEDMERLCKECENR 176

Query: 241 LPRIGLSATQKPVSAVARFLVGGAPVDSDIPADCAIIDVGHIRERDLALEIPPVPLEAVM 300
              +  SAT     A  R ++G    D +           H+    ++        + + 
Sbjct: 177 EQTLLFSATTG--GAALRDIIGKVLKDPE-----------HLMLNSVSQLAEGTRQQIIT 223

Query: 301 PNEVWERVYDRLAELVALHST---TLIFVNTRRMAERAARHLTERLGKDAVAAHHGSLAK 357
            +   ++  +++A+ +  + T    +IF NTR MA+R   HL  +  K  V   HG   +
Sbjct: 224 ADH--DQHKEQIAQWLLANETFDKAIIFTNTRAMADRIYGHLVAKDVKAFVL--HGEKDQ 279

Query: 358 EHRFDAEQRLKRGELRVLIATASLELGIDIGDVDLVCQMGSPRAIAPFLQRVGRSGHHVG 417
           + R  A +R K+G  +VL+AT     G+DI  +DLV     PR+   ++ RVGR+G   G
Sbjct: 280 KDRKLAIERFKQGSSKVLVATDVAARGLDIDGLDLVINFDMPRSGDEYVHRVGRTGRAGG 339