Pairwise Alignments

Query, 1544 a.a., ATP dependent helicase, Lhr family from Paraburkholderia bryophila 376MFSha3.1

Subject, 1434 a.a., putative ATP-dependent DNA helicase lhr from Pseudomonas putida KT2440

 Score = 1779 bits (4609), Expect = 0.0
 Identities = 936/1504 (62%), Positives = 1106/1504 (73%), Gaps = 86/1504 (5%)

Query: 40   AAAHDALAGFHPAVAGWFLKSFPAPTDAQAAAWPQIRQGRSTLVAAPTGSGKTLTAFLSA 99
            A  H  L  FHPAV+ WF + F   TDAQA AWP I  G+S L+AAPTGSGKTL+AFL+ 
Sbjct: 5    AKHHPVLELFHPAVSTWFRRHFATVTDAQAQAWPLIHAGQSMLLAAPTGSGKTLSAFLAV 64

Query: 100  LDDLVQQGLANNGALPDETLVVYVSPLKALSNDIRLNLQVPLQGIAAELDARGLPPLDIR 159
            LD+L+++G+ + G LP +TLV+YVSPLKALSNDIRLNLQ PL+GI+  +  +GL    I 
Sbjct: 65   LDELLREGMKHQGELPAQTLVIYVSPLKALSNDIRLNLQAPLEGISQAIAEQGLNAPRIT 124

Query: 160  TAVRTGDTTQQERNALKKRAPHILVSTPESLYVLLGSDSGRRMLCTVRTVIVDEIHALAG 219
            TAVRTGDT Q+ER A++K APHILV+TPESLYVL+GS SGR  L  V TVIVDEIHALAG
Sbjct: 125  TAVRTGDTPQKERAAMRKLAPHILVTTPESLYVLMGSASGREGLAHVHTVIVDEIHALAG 184

Query: 220  SKRGSHLALSLERLDALCGRRLPRIGLSATQKPVSAVARFLVG-GAPVDSDIPADCAIID 278
            +KRG+HLAL+LERL ALC + L RIGLSATQ+PV  VA+FLVG G P        CAI+D
Sbjct: 185  NKRGAHLALTLERLQALCKKPLRRIGLSATQRPVERVAQFLVGSGRP--------CAIVD 236

Query: 279  VGHIRERDLALEIPPVPLEAVMPNEVWERVYDRLAELVALHSTTLIFVNTRRMAERAARH 338
            +GH R+RDLA+E+PPVPL AVM  +VW  VYDRLA L   H TTL+FVNTRR+AER  RH
Sbjct: 237  IGHARKRDLAIEVPPVPLGAVMAIDVWGLVYDRLATLAREHRTTLVFVNTRRLAERITRH 296

Query: 339  LTERLGKDAVAAHHGSLAKEHRFDAEQRLKRGELRVLIATASLELGIDIGDVDLVCQMGS 398
            L++RLGK+AVAAHHGSL+K  R DAEQRLK G+L+VL+ATASLELGIDIGD+DLVCQ+ S
Sbjct: 297  LSDRLGKEAVAAHHGSLSKALRLDAEQRLKSGQLQVLVATASLELGIDIGDIDLVCQVAS 356

Query: 399  PRAIAPFLQRVGRSGHHVGGMPKGRLFPTSRDDLIECAALLDCVRRGELDALRIPRAPLD 458
            P +IA FLQRVGR+GH V G+PKGRLFPTSRDDLIEC ALLDCVR+GELDAL IPRAPLD
Sbjct: 357  PGSIAAFLQRVGRAGHQVDGVPKGRLFPTSRDDLIECVALLDCVRQGELDALHIPRAPLD 416

Query: 459  VLAQQIVAEVSSTEWSEDALFDLIRRAAPYAELAREQYDAVLRMLAEGYTSRNGPRAAYI 518
            VLAQQIVAE S+  W E  L D +R+A PYAEL +  Y A+LRMLAEGY  R G R+AY+
Sbjct: 417  VLAQQIVAEASNQAWHEQELLDCLRQATPYAELDQHHYQALLRMLAEGYNGRQGVRSAYL 476

Query: 519  HRDVVSGTLRGRRGGKLVAVTSGGTIPENADYAVVLEPQAVNIGTVNEDFAVESLAGDVF 578
            HRD VSGTLRGRRG +L A+TSGGTIP+NADYAV+LEPQA+NIG+VNEDFAVES+AGD+F
Sbjct: 477  HRDAVSGTLRGRRGSQLTALTSGGTIPDNADYAVLLEPQALNIGSVNEDFAVESIAGDIF 536

Query: 579  QLGNASYRILRIESGRVRVEDAQGQPPNIPFWLGEAPGRSDELSFGVARLREQIARLLAS 638
            QLGNASYRILR+E GRVRVEDA G PP IPFWLGEAPGRSDELS  VARL+ +I + LA 
Sbjct: 537  QLGNASYRILRVEPGRVRVEDAHGLPPTIPFWLGEAPGRSDELSAAVARLQARIDQQLAL 596

Query: 639  GDDATTPLDNAQASDTASKATASEYVPDATAEAPNPMPARLERAIDWLIAELGLDEAAAR 698
                T  +                                    + WL A   LDEA A 
Sbjct: 597  AGGDTVEV------------------------------------LAWLQATFELDEACAG 620

Query: 699  QIVDYLARARAALGVLPTQDTLVMERFFDESGGTQLVVHAPFGSRVNRAWGLALRKRFCR 758
            Q++DYLAR R  LG LP+QDTLVMERFFDESGGTQL++H+P+GSR+NRAWGLALRKRFCR
Sbjct: 621  QLLDYLARTREVLGALPSQDTLVMERFFDESGGTQLIIHSPYGSRINRAWGLALRKRFCR 680

Query: 759  QFNFELQAAATEDAIVLSLTGSHSFVLDEVWRYLHSNSAERLLIQALLDAPLFGVRWRWN 818
             FNFELQAAA+EDAIVLSL+ SHSF LDEVWRYL+S SAE +LIQALLDAPLFGVRWRWN
Sbjct: 681  TFNFELQAAASEDAIVLSLSTSHSFELDEVWRYLNSRSAEPILIQALLDAPLFGVRWRWN 740

Query: 819  ATTALGLPRYTGGRKTAPQLQRMRSEDLLTSVFPEQAACLENVVGERELPHHPLVDQTVD 878
            A  A+ LPR+ GGRK APQ+QRM+SEDL+ +VFP+Q ACLEN+ GER++P HPLV+QT+D
Sbjct: 741  AGVAMALPRFVGGRKVAPQIQRMKSEDLVAAVFPDQIACLENIAGERQIPDHPLVEQTLD 800

Query: 879  DCLHDAMDSERWLALLRRMENGDVRLVARDLPAPSPLAAEILNAKPYAYLDDAPIEERRT 938
            DCLH+AMDSE WLALLRRME+G VRL+ RDLPAPSPLA+ ILNA+PYA+LDDAP+EERRT
Sbjct: 801  DCLHEAMDSEGWLALLRRMESGAVRLLCRDLPAPSPLASAILNARPYAFLDDAPLEERRT 860

Query: 939  QAVLNRRWTDPASADDLGALDADAIASVRDEAWPQARSIDEMHEALTGLACITEAEAQHN 998
            QAVLNRRW D  S+DDLGALDADAIA+V  EAWPQ  + DEMHEAL  L  I + E   N
Sbjct: 861  QAVLNRRWNDVHSSDDLGALDADAIAAVAAEAWPQPANPDEMHEALMSLGAIGQVEVDAN 920

Query: 999  EGWPEWLASLARSGRATRIEIAADAALWLPAERLTCFDALYRSRNSGTTNSGPRFTPPLT 1058
              W   L  LA++GRA R+    D  LWL  ERL    ALY + +           P L 
Sbjct: 921  PCWDLLLRQLAKAGRALRL---PDDKLWLARERLNLLLALYPTAHR---------EPALE 968

Query: 1059 APKGYTDEWSADDALLDVLRARLTGFGPLPADAIADALKLPRTSVEQALGRLEAEGYVMR 1118
               G+      D AL ++LRARL+G GP     IA  L  P T +EQAL RLEAEGYV+R
Sbjct: 969  RLAGFDQPIEPDHALSELLRARLSGHGPQTLAQIAAPLGKPVTDIEQALARLEAEGYVLR 1028

Query: 1119 GRFTPNTSEEEWCERHLLARIHRYTVKRLRREIEPVERHDFMRFLFEWQHLTPDTRSEGR 1178
            G F+P  ++ +WCERHLLARIHRYTVKRLRREIEPV   DFMRFLF+WQHL PD R  G 
Sbjct: 1029 GHFSPGATDLQWCERHLLARIHRYTVKRLRREIEPVSLQDFMRFLFDWQHLAPDERLRGP 1088

Query: 1179 DALAAVLEQMEGFEAAASAWEEDILPARVKAYSNTSLDELCRSGKIVWTRLTERSRSAAG 1238
             A+A VL Q++GF +AA+AWE ++LPAR+K YS   LDE CRSG+  W+RL   +  A+ 
Sbjct: 1089 QAVAEVLGQLQGFPSAAAAWEAELLPARIKDYSPHWLDEACRSGQFAWSRLA--ATVASS 1146

Query: 1239 PVRSTPIVLLPRPQVRTWSALIDAERQPELSARAQSVYDALSQHGAMFFDELLHELRVLR 1298
             + STP+VLLPR Q+ TW +L  A     L  RAQ V++AL   GA+FFDEL HE  +L 
Sbjct: 1147 TLTSTPLVLLPRDQLNTWRSLAPAPAVDALGLRAQRVHEALKTQGALFFDELAHEAHLLP 1206

Query: 1299 IELESALGELVAAGLVNSDSFAGLRALLKPAAKRNAYSGSRRARSSMGLGALIGGMDDAG 1358
             ELE+AL ELV +GL  +DSF GLR+L+ PA KR++ +  R      G   L   M  AG
Sbjct: 1207 SELETALQELVGSGLARADSFTGLRSLITPATKRSSRNSRR------GHPPLSSSMAHAG 1260

Query: 1359 RWALVNRRASIATSEETAAQPGRPQQQRRRQLPAETLEHVAMTLLRRYGVVFWRVLEREA 1418
            RWAL+ R         + A P   Q+          LEH+A TLLRRYGV+ WR+L RE+
Sbjct: 1261 RWALLRR---------SDAPPDHDQR----------LEHIARTLLRRYGVICWRLLARES 1301

Query: 1419 DWLPPWRDLLRVYQRLEARGVIRGGRFVNGLAGEQFALPEAIPLLREVRRHANDGAFVCV 1478
            D LPPWR+LLR Y RLEARG IRGGRF+ GLAGEQFALPEA+ LLR+VRR   DG    V
Sbjct: 1302 DVLPPWRELLRCYHRLEARGEIRGGRFIAGLAGEQFALPEAVVLLRQVRRREPDGTLQVV 1361

Query: 1479 GGTDPLNLVGTLLVGERVPAVAGNRVLYRDGVVIATLAAGAFWFEPSVEASPTERERARS 1538
               DPLNL+G+LL G +VPAV GNR+LYRDG+ +A   AG + +   VEAS  E+E  R 
Sbjct: 1362 SAGDPLNLIGSLLPGAKVPAVIGNRLLYRDGIPVAVRMAGRYAY--LVEASAQEQESWRQ 1419

Query: 1539 WLTR 1542
             L R
Sbjct: 1420 KLLR 1423