Pairwise Alignments

Query, 1062 a.a., Multidrug efflux pump subunit AcrB from Paraburkholderia bryophila 376MFSha3.1

Subject, 1073 a.a., RND transporter from Pseudomonas simiae WCS417

 Score = 1077 bits (2785), Expect = 0.0
 Identities = 566/1061 (53%), Positives = 737/1061 (69%), Gaps = 27/1061 (2%)

Query: 3    IVNVALKRPYTFIVMAILIVLATPFVLFTTPVDVLPEINIPVVSIIWTYNGLSAEDMAHR 62
            +V  AL++PYTFIV+AI I +  P     TP DV P+I IPVV+++W YNGLS + MA R
Sbjct: 4    LVKTALQKPYTFIVLAIFICIIGPMAALRTPTDVFPDIGIPVVAVVWQYNGLSPDAMAGR 63

Query: 63   IASVNERSLTTTVNDIEHIESQSLAGITILKVFLQPTANIQTAIAQTVAVEQAQLKQMPP 122
            +    ERSL+TTVNDIEHIESQSL G+ I+K+F QP  +I+TA AQ  AV Q  LKQMPP
Sbjct: 64   VIYTYERSLSTTVNDIEHIESQSLPGMGIVKIFFQPGVDIRTANAQVTAVSQTVLKQMPP 123

Query: 123  GATPPLVISYSASSIPVIQLGLSSTKLSEQQLNDTALNFLRPQLVTIPGAAVPYPYGGKS 182
            G TPPL+++YSAS++P++Q+  SS  LSE ++ D   N +R  L  +PG A+P P GGK 
Sbjct: 124  GITPPLILNYSASTVPILQMAFSSPSLSEAKIRDLVQNNIRLPLSALPGLAMPTPMGGKQ 183

Query: 183  RLISVDLNTRALLSKGLTPLDVVSAFNAQNLILPTGTAKIGPKEYTINMNGSPATLEGLN 242
            R I++DL+ +AL +KGL+  DV +A   QN I+P GTAK+GP EYTI +N SP  ++ LN
Sbjct: 184  RQITLDLDPQALAAKGLSAQDVGNALALQNQIIPVGTAKLGPNEYTILLNNSPKAIDELN 243

Query: 243  DIPVRTVNGATTYLREVAHVRDGFSPQTNIVRENGHRGVLMSVLKNGSASTLSIVNTLHG 302
            D+P++TV+GA   + +VAHVRDG  PQTNIVR +GHR VLM  LKNGS STLSI++ +  
Sbjct: 244  DLPIKTVDGALITIGQVAHVRDGSPPQTNIVRVDGHRAVLMPALKNGSISTLSIIDGIRQ 303

Query: 303  LLPAARAALPPDLKITALFDQSVFVKAAVQGVVREAVVAAALTAAMILLFLGNWRSTCII 362
            +LP     LPP LK + L D SVFVK +V  V +E ++AA LT+AMILLFLG+WRST II
Sbjct: 304  MLPRINETLPPSLKTSLLGDASVFVKQSVGSVAQEGIIAALLTSAMILLFLGSWRSTIII 363

Query: 363  AISIPLSILSSLIALHALGQTINIMTLGGLALAVGILVDDATVTIENIERHLHMGTNLHD 422
            A SIPL++LS++  L   GQT+N+MTLGGLALAVGILVDDATVTIENI  HL  G  +  
Sbjct: 364  AASIPLAVLSAIALLAVSGQTLNVMTLGGLALAVGILVDDATVTIENINWHLEQGKAVKT 423

Query: 423  AILEGAGEIAIPALVSTLCICIVFVPMFFLTGVARYLFVPLAEAVVFAMLASYVLSRTLV 482
            AIL+GA +I  PA VS LCICIVFVPMF L G+A YLF P+A AV+FAM +S++LSRTLV
Sbjct: 424  AILDGAAQIVGPAFVSLLCICIVFVPMFLLQGIAGYLFRPMALAVIFAMASSFILSRTLV 483

Query: 483  PTLAMLLM-------GHAHKPKAD-----------MKPSLFARLYRRFDNGFER----MR 520
            PTLAM L+       G  H P+ +            + +   +    F  GFER    +R
Sbjct: 484  PTLAMFLLKPHVPEQGAGHHPEDEFINHHEGEQHTQQRNAVLQGVLNFQQGFERHFSNIR 543

Query: 521  AAYIVILSSLLVRRARFGSIFLGFCVVSMGLAFVLGEDFFPSVDAGNIRLHMRAPTGTRI 580
              Y  +L+  L  R RF   FL   + S  L   LG+DFFP+ DAG + LH+R P GTRI
Sbjct: 544  DTYHGLLTLALGNRKRFIVGFLACVLASFLLLPSLGQDFFPATDAGALALHVRLPLGTRI 603

Query: 581  EETARLADEVEKVIREVVPEKELGTILDNLGLPYSGINLSYSNAGTIGTLDGEIQIALKE 640
            EE+A   D +E  IREV+P +EL TI+DN+G+P SGI+++YS++GTIG  DG+IQ+ LK+
Sbjct: 604  EESAAAFDRIEARIREVIPAEELDTIVDNIGIPLSGIDMAYSSSGTIGPQDGDIQVTLKK 663

Query: 641  GHEPTQLYVDKLRAMLPQRFPGVEFFFQPADIVTQILNFGLPAAVDIQIAGADQQGNFDV 700
             H PT  YV KLR  LPQ FPG  F F PADI +QILNFG PA +D++I+G   + N   
Sbjct: 664  DHAPTADYVKKLREALPQSFPGSHFAFLPADISSQILNFGAPAPLDVKISGRSDEENRAY 723

Query: 701  ARKLLKQVRMIPGTVDTHIQQKLDEPAINLQMDRTRLQQLNLTASNVAQNVLISLSGSSQ 760
            A +L ++++ +PG  D  IQQ    P++ + +DR R   L +T  +V  +++ SL+GSSQ
Sbjct: 724  AVELERRLQHVPGIADLRIQQSTGYPSLQVNVDRLRANGLGITERDVTNSMVASLAGSSQ 783

Query: 761  TSPGFWYNDRNGVEYNVAVQTPQYSISSIDDLLRTPVSASATGPTQLLGNLVRVQPQNQF 820
             +P FW N  NGV Y++   TPQY + S+  L   PV+  A G +Q+LG +  +      
Sbjct: 784  VAPTFWLNPANGVSYSIVAATPQYRLDSLPSLEALPVT-GAGGQSQILGGVASISRVESP 842

Query: 821  AVVTHYNIRPVIDLYVSVDKRDLGSVADQVDKLVEQARASLPRGSQITVRGQVQTMRSSY 880
            AVVTHYNI P +DLY +V  RDLG VA  V K+++   A  P+G+ I++ GQ+  +  ++
Sbjct: 843  AVVTHYNIEPTLDLYANVQGRDLGGVARDVQKVLDDTAAMRPKGAVISLHGQIDALHEAF 902

Query: 881  FGLGLGVAMAIVLVYLLIVVNFQSWVDPLIIVSALPAALAGIVWMLFLTGTHLSVPALTG 940
             GL  G+  A+VL+YLLIVVNFQSW DP +I++ALPAALAGIVWMLFL+GT LSVPALTG
Sbjct: 903  SGLSFGLLGAVVLIYLLIVVNFQSWADPFVIITALPAALAGIVWMLFLSGTSLSVPALTG 962

Query: 941  AIMTMGVATANSILMVAFARQRLSAGAPPLTAALEAGASRIRPVLMTAFAMIIGMIPMAL 1000
            AI+ MGVATANSIL+V+F R+RL+     L AA+EAG +R RPV MTA AMIIGM+P+A+
Sbjct: 963  AILCMGVATANSILVVSFCRERLAEHGDALKAAMEAGYTRFRPVCMTALAMIIGMLPLAI 1022

Query: 1001 GLGEGAEQNAPLGRAVIGGLLFATVSTLFFVPLVFAGIHTR 1041
                  EQNAPLGRAVIGGL+FAT++TL FVP+VF+ IH R
Sbjct: 1023 ----SEEQNAPLGRAVIGGLIFATIATLLFVPVVFSLIHGR 1059