Pairwise Alignments

Query, 342 a.a., DNA end-binding protein Ku from Paraburkholderia bryophila 376MFSha3.1

Subject, 277 a.a., Ku domain protein from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  297 bits (760), Expect = 2e-85
 Identities = 147/277 (53%), Positives = 199/277 (71%), Gaps = 3/277 (1%)

Query: 4   MIWKGAISFGLVHVPVQLYPATKSEKVGFNLLDKRTIDPVGYKQINKRTGKDVTRDNIVR 63
           +IWKGAISFGLVHVPV LYPA++   + F+ LD+R++DPVGY++INKRTGK +  D+IV+
Sbjct: 1   VIWKGAISFGLVHVPVALYPASQDSGIDFDWLDRRSMDPVGYQRINKRTGKPIQGDDIVK 60

Query: 64  GFEYEKDKYVVLTDDEIRAANPESTQTVDILAFVDAPDISFLYLDTPYFLTPDRKGEKVY 123
           G   +  +YV++TD +I+AA P STQT++I  FV A +I FL L+ PY+L P  KGEKVY
Sbjct: 61  GIRQDDGEYVLVTDAQIKAAYPVSTQTIEIETFVQAAEIPFLLLEKPYYLEPIGKGEKVY 120

Query: 124 ALLREAMKSSGKVGVASVVLHNKQHLAALIPVGPVLALNTLRWAEEVRDFDEFKLPAEGT 183
           ALLREAM  SG +G+A VV+H K+HLAAL+P+GP L LNT+RWA E+R  D+ KLPA G 
Sbjct: 121 ALLREAMAQSGVIGIARVVMHTKEHLAALVPMGPALVLNTIRWANEIRPVDDLKLPAAGK 180

Query: 184 KAAGVSARELDMAQKLIDDMSDTWDPSKYHDTFRDDIMALVDRKVREGKTEEITDIEAPR 243
            AAGV A EL MA +LI DM+  WD + Y D F   + ALV +KV+ G T+ +  +E   
Sbjct: 181 AAAGVKAAELKMATQLISDMTGPWDATAYEDRFVSAVQALVRQKVKAGDTKTVKPLEDAV 240

Query: 244 ESRQSADILDLSDLLKRSLGR---GKSKPASGTRKRA 277
           E+   ++++DL++LL RSL     GK + A+  R+RA
Sbjct: 241 EASAPSNVVDLTELLARSLSSRKGGKDRKAAAPRRRA 277