Pairwise Alignments

Query, 299 a.a., conserved protein found in conjugate transposon (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 280 a.a., Bacteroides conjugative transposon TraN protein from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  114 bits (286), Expect = 2e-30
 Identities = 71/261 (27%), Positives = 144/261 (55%), Gaps = 13/261 (4%)

Query: 34  IISPHKIEVTFQKTVHILFPSEVKYVDLGSFDIIADKATGAENVVRIKAAVKGFEGETNF 93
           +++P+ +EV + +T  ++FP+++K  D G+ +++A K   A NV+++KA  +GF  E+N 
Sbjct: 26  VLTPYPVEVGWDQTTVLIFPAKIKSADRGNGNVLAQKDAYAANVLKLKAGKRGF-SESNL 84

Query: 94  SVITADGCFYSFNVVYKDEPAQLSIEMEDWLRDNPEGGIAGDRMFVKLKELGGETPLVVN 153
            V+T DG  Y F V Y  +P +L+I++    +   E  +A     ++  ++G E    ++
Sbjct: 85  HVVTEDGKIYPFTVHYNPKPDKLTIDIGK--QQQMEAAVA----VLENTDIGREQ---LD 135

Query: 154 RIMYTLYKKNKRDIRHIGCKKYGIQTLLKGLYINNDLLYLHTSLRNSSDISFDIDYIRFK 213
           R+   +++  ++   +   K   ++  LKG+Y + ++L+    L+N S I+  I   RF 
Sbjct: 136 RLSGKVFQ--EKGFLYRSDKNGKVKLRLKGIYSHREVLFFLFELKNRSRIACPIQQWRFV 193

Query: 214 VVDKKVAKRTAMQENFIEPVR-TYNRLITVDGKATVRGIFVLPKLTLPDDKLLVVEVYEK 272
           + D+K  KRTA ++  + P+   Y +   ++GK   R +    + T+ D K +V+ ++E+
Sbjct: 194 IQDRKQVKRTAERQVNLTPLHMQYEKPKGIEGKGENRLVVAFSQFTIADAKKMVIRLFEE 253

Query: 273 GGARHQSFRIENTDLVAAKPI 293
            G R+    ++   L+ A+PI
Sbjct: 254 NGDRNPVLSVKGKHLLKARPI 274