Pairwise Alignments

Query, 393 a.a., putative mobilization protein (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 429 a.a., Relaxase/Mobilisation nuclease domain. from Echinicola vietnamensis KMM 6221, DSM 17526

 Score =  273 bits (697), Expect = 9e-78
 Identities = 151/393 (38%), Positives = 222/393 (56%), Gaps = 19/393 (4%)

Query: 2   QAFEPYIALNSHVRKPVIHISLNPSPKDILSKEQMTVLAQEFMEKFGYGNQPYIVWLHED 61
           Q+F PY+  N +  K  +HISLNP PKD +S E+   +A+E+M   GYG QP++V+ H D
Sbjct: 50  QSFAPYLIANRNTEKHTLHISLNPDPKDKVSDEKFRKMAEEYMRGMGYGGQPFVVFKHTD 109

Query: 62  IDRKHMHIISVRINEKGEKIDHNREAIRAQNICRDMEVKYGLHSTLGEHSERELLSLQKV 121
           IDR H+HI+SV ++E+G+KI    E +R+  +CR++E KYGL     +         + V
Sbjct: 110 IDRSHIHIVSVCVDEQGKKISDKFEKVRSMKVCRELESKYGLIPATDKERRLNEKIFRPV 169

Query: 122 DYPKGDVKAQVKHTARTLLECYNCHSLAEYNTLLNLYNVTVYEVRGSVDGKEYYGIMYGA 181
           DY  GD+K+Q+    R L   Y   +L EYN LL+L+N+T  +V G + GK   G++Y  
Sbjct: 170 DYRAGDIKSQIASVVRHLPSYYQFQTLGEYNALLSLFNITTEKVEGELQGKPQQGLLYIP 229

Query: 182 LDDDGQQAGTPFKSSKFGKVFGYEALQKKFAATAEKVKRNSLAERARQEIVKAMQDISTK 241
           L++ G+++G PFK+S FGK  G  AL+  FA     +K +   +  +  +  A+++ S +
Sbjct: 230 LNEKGEKSGHPFKASLFGKNAGIPALELHFAKCKTALKNDPSKQTLKAAVTIALKNTSDE 289

Query: 242 EAFARRLKDADIEVVYRINPEGRLYGITFIDHTNRTVFNGSRLGKAFSANVFNELFNN-- 299
           +AF ++L +  I VV R N  GR+YG+TFIDH ++TV+NGSRLGK FSAN FN  +N+  
Sbjct: 290 QAFKKQLAEQGINVVARRNDTGRIYGMTFIDHNSKTVWNGSRLGKEFSANTFNGYWNHNI 349

Query: 300 -PDADRTKLIPPPEQDTPRQARETDAEERQEREEYRQQENRGNYQSEPSGSLIDTSALGA 358
            PD     L P            T  +     EE     N  N   +P   LI+  ALG 
Sbjct: 350 KPDIKEPALAP--------SKLSTSNDAVLPAEEPHHLFNFLNTSEKPESGLIE--ALGG 399

Query: 359 IDIFSVLMEDDHTHEYIDPAFRFGHKKKKKRRR 391
                 L+ +    +Y + AF    KK+KKRRR
Sbjct: 400 ------LLPEAQGEDYEEQAFANRMKKRKKRRR 426