Pairwise Alignments

Query, 407 a.a., transposase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 403 a.a., integrase (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  146 bits (369), Expect = 9e-40
 Identities = 113/403 (28%), Positives = 190/403 (47%), Gaps = 21/403 (5%)

Query: 1   MERTTFCLLFYIRRTKLNRNGEAPIMMRITVNGVRVDASVKKTILPEFWSAAKGKALEKK 60
           M R+TF +L YI R K+  +G A I+ RITV+G     S   +  P+ W+A KG+ +   
Sbjct: 1   MSRSTFSILPYINRQKVKADGTANILCRITVDGKSAAISTGISCTPQEWNAKKGE-VRNA 59

Query: 61  REYKELNLYLDSIRLRIMKIQRELEIEEVSVSANSVLDRFLGKDAPVQRTLFEVFREHND 120
           R+   L  +LD I+ +   +     I  V +    + D+          T         D
Sbjct: 60  RDNGRLASFLDEIKDKYNALLVANGIITVEMLKAVLKDK---------DTTGRFLLSFGD 110

Query: 121 KCVQLSGTDMAPATVQRYETSLKHTRDFVWETYHKKDVLLDEVSRQFIEDYEFWLKTEKK 180
             V+   T  A  T     T  K+ RDFV  +  K D+  +++   F E+Y+ +LK ++ 
Sbjct: 111 TIVEWYRTAKARQTFLHKRTWQKNLRDFV-HSLDKDDIAFEDIDENFGEEYKLFLKRDQG 169

Query: 181 CCHNTATKYLKNFKKIIRIALAKGWMKNDPFLEIRFSLDKVEPDF--LEDSEIQKLISKE 238
              +     L     ++  A+ +  ++ +P  +I +   K  P    +  ++  K++S  
Sbjct: 170 RIDSYVNHCLLWLNMLMYKAVDRSIIRFNPIAKIGYE-KKAAPKMTHISKADFIKMLSTP 228

Query: 239 IDIPRLSQVRDIFVFCCFTGLAFSDIHGLRKEHIVEDSNGVRWIRKGRQKTKIMCNIPLM 298
           +   R    R  F+F   T L++ D+  L   HI E+S G ++IRK R+KT +   +PL 
Sbjct: 229 MADERTELARRCFIFASLTSLSYIDVKKLYPRHISENSEGRKFIRKEREKTGVEFFVPLH 288

Query: 299 EIPLKILEKYSTNEYCKKHGVLFPVLCNQKMNAYL--KELADICGIKKTLTTHVGRHTFA 356
            I  KIL  Y+T +  K    +FP+   +K + YL    L  + GI   L  H  RHTF 
Sbjct: 289 PIAEKILSLYNTTDDSKP---VFPL--GEKKDIYLDVHTLGMVLGISNKLGFHASRHTFG 343

Query: 357 TFALANGVSIESVAKMLGHTNVQMTRHYARVLDRTVIREMSQI 399
              L   + I S+AKM+GH ++  T+ YA+V ++ +  +M ++
Sbjct: 344 VLMLNEDIPIGSIAKMMGHADITSTQVYAQVTEQKISNDMDKL 386