Pairwise Alignments

Query, 195 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 181 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  110 bits (274), Expect = 2e-29
 Identities = 60/175 (34%), Positives = 102/175 (58%), Gaps = 2/175 (1%)

Query: 5   INEKRLLTELKNGSFQAFERLYNMYSGKLYNFIMRISSGNQYMAEEVVQSAFIRVWEVRE 64
           + E  +L ++K G   AF  LY++Y  K+YNF  R+   +  +  EVVQ  F++VWE +E
Sbjct: 1   MEETIILEKVKAGDAAAFSLLYDLYWLKVYNFA-RLYITSSSVISEVVQDVFVKVWESKE 59

Query: 65  RVEPESSFISFLCTIAKNLLMNMYQRQTVEYVYNEYLKNTGVDRDSQTEESIDLRFLNEY 124
            ++   +F   L  I +N++ N  +R   E  +   +   G++     EE +D   L  Y
Sbjct: 60  FLDITKNFDGLLFMITRNIIFNYSRRHFNELNFKMTVLK-GLENSYDIEEELDAADLKNY 118

Query: 125 IDSLAEELPAQRKKIFILSKRQNYTNKEIAEMMGISESTVATQLSLAVKFMREQL 179
           ID L  +LPA+R++IF +S+ ++ +N+EIAE   +SE  +  Q++LA+KF++E L
Sbjct: 119 IDKLISQLPARRQQIFRMSREEHLSNREIAERCAVSEKAIERQITLALKFIKENL 173