Pairwise Alignments

Query, 195 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 191 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score =  107 bits (267), Expect = 1e-28
 Identities = 58/190 (30%), Positives = 108/190 (56%), Gaps = 5/190 (2%)

Query: 5   INEKRLLTELKNGSFQAFERLYNMYSGKLYNFIMRISSGNQYMAEEVVQSAFIRVWEVRE 64
           +NE+  +  +K G  QAF  LYN Y  ++Y+F  R+       AEE+VQ  F+++WE R 
Sbjct: 1   MNERERVLAIKGGDHQAFIDLYNEYWSQVYDF-SRLYIATIADAEEIVQDVFVKLWESRH 59

Query: 65  RVEPESSFISFLCTIAKNLLMNMYQRQTVEYVYNEYLK----NTGVDRDSQTEESIDLRF 120
            ++ + +   FL  + +N++ N  +++  E ++   +     N G    +  EE      
Sbjct: 60  LLKEDENIKGFLFIVTRNIVFNKNKKRVNENLFKTSVLVAYGNEGYYNSTTVEEDYCASQ 119

Query: 121 LNEYIDSLAEELPAQRKKIFILSKRQNYTNKEIAEMMGISESTVATQLSLAVKFMREQLM 180
           L  +ID L   LP Q++K F+LS+ ++ + KEIAE +GIS+ TV   +  A+KF+++++ 
Sbjct: 120 LKIFIDRLINSLPEQQRKCFLLSREESLSYKEIAERLGISQKTVEIHMGKALKFLKDKVK 179

Query: 181 KHYDKIVALL 190
           + ++ +++LL
Sbjct: 180 RGWEILLSLL 189