Pairwise Alignments

Query, 195 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 187 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 80.1 bits (196), Expect = 2e-20
 Identities = 49/180 (27%), Positives = 96/180 (53%), Gaps = 3/180 (1%)

Query: 2   VDSINEKRLLTELKNGSFQAFERLYNMYSGKLYNFIMRISSGNQYMAEEVVQSAFIRVWE 61
           +++ +EK+LL  +  G  +AF+  +  Y  ++  FI  +   +Q  AE++ Q  F+ +W 
Sbjct: 1   METFDEKQLLKAISEGDEKAFKTFFLYYYPRIKGFINGLLQ-SQEEAEDLSQDIFLTLWN 59

Query: 62  VRERVEPESSFISFLCTIAKNLLMNMYQRQTV--EYVYNEYLKNTGVDRDSQTEESIDLR 119
            R  +   ++   +L  I+KN +    +R  +   Y   E  K +     ++T+++I L+
Sbjct: 60  NRSSLHTINNLKPYLFRISKNAVYRHIERALLFRNYQQKETEKYSPPQESNETDDTIHLK 119

Query: 120 FLNEYIDSLAEELPAQRKKIFILSKRQNYTNKEIAEMMGISESTVATQLSLAVKFMREQL 179
            L   +  + E++P QR+KI+ +S+     N+EIA  +GI++ TV   LS A+  +R+ L
Sbjct: 120 ELELLVTMVVEKMPPQRQKIYKMSRESGMNNEEIARELGINKRTVENHLSQALTDIRKIL 179