Pairwise Alignments

Query, 195 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

Subject, 183 a.a., RNA polymerase ECF-type sigma factor (NCBI ptt file) from Bacteroides thetaiotaomicron VPI-5482

 Score = 84.0 bits (206), Expect = 2e-21
 Identities = 51/172 (29%), Positives = 97/172 (56%), Gaps = 5/172 (2%)

Query: 9   RLLTELKNGSFQAFERLYNMYSGKLYNFIMRISSGNQYMAEEVVQSAFIRVWEVRERVEP 68
           + L   ++G+ +AFE ++  Y  K   FI      ++  AEE+ +  F+ +W   + ++ 
Sbjct: 8   KTLEAFQDGNHKAFETVFIAYYNKTKAFIDGYIK-SESDAEELTEDLFVNLWINHDSIDA 66

Query: 69  ESSFISFLCTIAKNLLMNMYQRQTVEYVYNEYLKNTG-VDRDSQTEESIDLRFLNEYIDS 127
             SF S+L TIA+N  +N  + +   YV++ YL ++  ++  S +EE +  + L   ID 
Sbjct: 67  SKSFSSYLHTIARNSAINFLKHK---YVHDTYLNSSQEIEYSSTSEEDLIAKELGLLIDD 123

Query: 128 LAEELPAQRKKIFILSKRQNYTNKEIAEMMGISESTVATQLSLAVKFMREQL 179
           +  ++  QRK I+ LS+++  +N EIA  +  ++  V +QLSLA+K +R+ +
Sbjct: 124 IVGKMSEQRKMIYTLSRQEGLSNAEIAIQLNTTKRNVESQLSLALKEIRKAI 175